all/11.ameriflux.ncl
changeset 0 0c6405ab2ff4
child 1 4be95183fbcd
equal deleted inserted replaced
-1:000000000000 0:d279dc452c60
       
     1 ;************************************************************
       
     2 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"
       
     3 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl"
       
     4 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"
       
     5 ;************************************************************
       
     6 procedure set_line(lines:string,nline:integer,newlines:string) 
       
     7 begin
       
     8 ; add line to ascci/html file
       
     9     
       
    10   nnewlines = dimsizes(newlines)
       
    11   if(nline+nnewlines-1.ge.dimsizes(lines))
       
    12     print("set_line: bad index, not setting anything.") 
       
    13     return
       
    14   end if 
       
    15   lines(nline:nline+nnewlines-1) = newlines
       
    16 ;  print ("lines = " + lines(nline:nline+nnewlines-1))
       
    17   nline = nline + nnewlines
       
    18   return 
       
    19 end
       
    20 ;*************************************************************
       
    21 begin
       
    22 
       
    23   plot_type     = "ps"
       
    24   plot_type_new = "png"
       
    25 
       
    26 ;------------------------------------------------------
       
    27 ; edit table.html of current model for movel1_vs_model2
       
    28 
       
    29  if (isvar("compare")) then
       
    30     html_name2 = compare+"/table.html"  
       
    31     html_new2  = html_name2 +".new"
       
    32  end if
       
    33 
       
    34 ;------------------------------------------------------
       
    35 ; edit table.html for current model
       
    36 
       
    37  html_name = model_name+"/table.html"  
       
    38  html_new  = html_name +".new"
       
    39 
       
    40 ;------------------------------------------------------
       
    41 
       
    42   nmonth = 12
       
    43 
       
    44 ; for nee, gpp, and ar
       
    45 ; observed unit is gC/m2/day
       
    46 ; model    unit is gC/m2/s
       
    47 ; to change to observed unit,
       
    48 
       
    49   factor_flux = 86400.
       
    50   
       
    51 ; for incident solar radiation,
       
    52 ; observed Rg_f unit is MJ/m2/day
       
    53 ; model (FSDS)  unit is  W/m2
       
    54 ; to change to model unit,
       
    55 
       
    56   factor_rad = 1.e6/86400.
       
    57 
       
    58 ;************************************************
       
    59 ; observed data info
       
    60 ;************************************************
       
    61 
       
    62  station = (/"ARM_Oklahoma" \
       
    63             ,"ARM_Oklahoma_burn" \
       
    64             ,"ARM_Oklahoma_control" \
       
    65             ,"Atqasuk" \
       
    66             ,"Audubon" \
       
    67             ,"AustinCary" \
       
    68             ,"Bartlett" \
       
    69             ,"Bondville" \
       
    70             ,"Brookings" \
       
    71             ,"Donaldson" \
       
    72             ,"Duke_Forest_Hardwoods" \
       
    73             ,"Duke_Forest_Open_Field" \
       
    74             ,"Duke_Forest_Pine" \
       
    75             ,"Fermi_Ag" \
       
    76             ,"Fermi_Prairie" \
       
    77             ,"Flagstaff_Managed" \
       
    78             ,"Flagstaff_Unmanaged" \
       
    79             ,"Flagstaff_Wildfire" \
       
    80             ,"FortPeck" \
       
    81             ,"FreemanRanch_mesquite" \
       
    82             ,"Goodwin_Creek" \
       
    83             ,"HarvardForest" \
       
    84             ,"HarvardForestHemlock" \
       
    85             ,"HowlandForestMain" \
       
    86             ,"HowlandForestWest" \
       
    87             ,"Ivotuk" \
       
    88             ,"KendallGrasslands" \
       
    89             ,"KennedySpaceCenterPine" \
       
    90             ,"KennedySpaceCenterScrub" \
       
    91             ,"LittleProspect" \
       
    92             ,"LostCreek" \
       
    93             ,"Mead-irrigated" \
       
    94             ,"Mead-irrigated-rotation" \
       
    95             ,"Mead-rainfed" \
       
    96             ,"Metolius_2nd_YoungPonderosaPine" \
       
    97             ,"MetoliusEyerly" \
       
    98             ,"MetoliusIntermediatePine" \
       
    99             ,"MetoliusOldPonderosaPine" \
       
   100             ,"MissouriOzark" \
       
   101             ,"Mize" \
       
   102             ,"MorganMonroe" \
       
   103             ,"NiwotRidge" \
       
   104             ,"NorthCarolina_cc" \
       
   105             ,"NorthCarolina_lp" \
       
   106             ,"ParkFalls" \
       
   107             ,"Rayonier" \
       
   108             ,"SantaRita" \
       
   109             ,"SkyOaks_Old" \
       
   110             ,"SkyOaks_PostFire" \
       
   111             ,"SkyOaks_Young" \
       
   112             ,"SylvaniaWilderness" \
       
   113             ,"Toledo" \
       
   114             ,"Tonzi" \
       
   115             ,"UCI_1850" \
       
   116             ,"UCI_1930" \
       
   117             ,"UCI_1964" \
       
   118             ,"UCI_1964wet" \
       
   119             ,"UCI_1981" \
       
   120             ,"UCI_1989" \
       
   121             ,"UCI_1998" \
       
   122             ,"UMBS" \
       
   123             ,"Vaira" \
       
   124             ,"WalkerBranch" \
       
   125             ,"WillowCreek" \
       
   126             ,"WindRiver" \
       
   127             ,"Wisconsin_ihw" \
       
   128             ,"Wisconsin_irp" \
       
   129             ,"Wisconsin_mrp" \
       
   130             ,"Wisconsin_myjp" \
       
   131             ,"Wisconsin_pb" \
       
   132             ,"Wisconsin_rpcc" \
       
   133             ,"Wisconsin_yhw" \
       
   134             ,"Wisconsin_yjp" \
       
   135             ,"Wisconsin_yrp" \
       
   136             /)
       
   137 
       
   138  field   = (/"NEE Flux" \
       
   139             ,"Shortwave Incoming" \
       
   140             ,"Latent Heat" \
       
   141             ,"Sensible Heat" \
       
   142             ,"GPP Flux" \
       
   143             ,"Respiration" \
       
   144             /)
       
   145 
       
   146  field_unit = (/"gC/m2/day" \
       
   147                ,"W/m2" \
       
   148                ,"W/m2" \
       
   149                ,"W/m2" \
       
   150                ,"gC/m2/day" \
       
   151                ,"gC/m2/day" \
       
   152                /)
       
   153 
       
   154  nstation = dimsizes(station)
       
   155  nfield   = dimsizes(field)
       
   156 
       
   157 ;========================================================================
       
   158 ; get observed info: number of year, first/last year, lat, lon
       
   159 ; and annual data
       
   160 
       
   161  dir_root = diro + "ameriflux/"
       
   162 
       
   163  year_station = new ((/nstation/),integer) ; number of year
       
   164  year_ob      = new ((/nstation/),string)  ; observed year
       
   165  year_ob_i    = new ((/nstation/),integer) ; first year
       
   166  year_ob_f    = new ((/nstation/),integer) ; last year
       
   167  lat_ob       = new ((/nstation/),float)   ; latitude
       
   168  lon_ob       = new ((/nstation/),float)   ; longitude 
       
   169 
       
   170  data_ob_ann  = new ((/nfield, nmonth, nstation/),float)
       
   171 
       
   172  do n = 0, nstation-1
       
   173 
       
   174     dir_f = dir_root + station(n)+"/"
       
   175     fil_f = "timeseries_L4_m.nc"
       
   176     fo   = addfile (dir_f+fil_f,"r")
       
   177  
       
   178     lat_ob(n) = fo->lat
       
   179     lon_ob(n) = fo->lon
       
   180 
       
   181     year      = fo->year
       
   182 
       
   183     year_station(n) = dimsizes(year)
       
   184     year_ob_i(n)    = year(0)
       
   185     year_ob_f(n)    = year(year_station(n)-1)
       
   186     year_ob(n)      = year_ob_i(n) + "-" + year_ob_f(n)
       
   187  
       
   188     delete (year)
       
   189  
       
   190     data = fo->NEE_or_fMDS
       
   191     data_ob_ann(0,:,n) = dim_avg(data(month|:,year|:))
       
   192 
       
   193     data = fo->Rg_f
       
   194     data_ob_ann(1,:,n) = dim_avg(data(month|:,year|:)) * factor_rad
       
   195 
       
   196     data = fo->LE_f
       
   197     data_ob_ann(2,:,n) = dim_avg(data(month|:,year|:))
       
   198 
       
   199     data = fo->H_f
       
   200     data_ob_ann(3,:,n) = dim_avg(data(month|:,year|:))
       
   201 
       
   202     data = fo->GPP_or_MDS
       
   203     data_ob_ann(4,:,n) = dim_avg(data(month|:,year|:))
       
   204 
       
   205     data = fo->Reco_or
       
   206     data_ob_ann(5,:,n) = dim_avg(data(month|:,year|:))
       
   207 
       
   208     delete (data) 
       
   209     delete (fo)   
       
   210  end do
       
   211 
       
   212 ;--------------------------------------------------------------
       
   213 ; find (# of year observed) >=4 and year_ob_i <= 2001
       
   214 
       
   215  i_long_ob = ind(year_station .ge. 4 .and. year_ob_i .le. 2001)
       
   216  
       
   217  station_long      = station(i_long_ob)
       
   218  lat_ob_long       = lat_ob(i_long_ob)
       
   219  lon_ob_long       = lat_ob(i_long_ob)
       
   220  year_ob_long      = year_ob(i_long_ob)
       
   221  year_ob_i_long    = year_ob_i(i_long_ob)
       
   222  year_ob_f_long    = year_ob_f(i_long_ob)
       
   223  year_station_long = year_station(i_long_ob)
       
   224 
       
   225  nstation_long     = dimsizes(station_long)
       
   226 
       
   227 ;=========================================================
       
   228 ;   get model data at observed lat-lon
       
   229 
       
   230     fm   = addfile (dirm+film8,"r")
       
   231 
       
   232     xm   = fm->lon
       
   233     ym   = fm->lat 
       
   234     date = fm->date
       
   235 
       
   236     date_dim = dimsizes(date)
       
   237     nyear  = date_dim(0)
       
   238 
       
   239     data_mod      = new ((/nfield,nyear,nmonth,nstation/),float)
       
   240     data_mod_ann  = new ((/nfield,nmonth,nstation/),float)
       
   241     data_mod_long = new ((/nfield,nyear,nmonth,nstation_long/),float)
       
   242 
       
   243 ;   change to unit of observed (u mol/m2/s)
       
   244 ;   Model_units [=] gC/m2/s
       
   245 ;   12. = molecular weight of C
       
   246 ;   u mol = 1e-6 mol
       
   247 
       
   248     factor = 1.e6 /12.
       
   249 
       
   250 ;------------------------------------------------------------
       
   251 ;   interpolate model data into observed station
       
   252 ;   note: model is 0-360E, 90S-90N
       
   253 
       
   254 ;   to be able to handle observation at (-89.98,-24.80)
       
   255     ym(0) = -90.
       
   256 ;------------------------------------------------------------  
       
   257 
       
   258 if (ENERGY .eq. "old") then
       
   259 
       
   260   data = fm->NEE
       
   261   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   262   data_mod_ann(0,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
       
   263   data_mod(0,:,:,:) = yy(:,:,:) * factor_flux
       
   264 
       
   265 ;;data  = fm->NETRAD
       
   266 ; data  = fm->FSA
       
   267 ; data1 = fm->FIRA
       
   268 ; data  = data - data1
       
   269 ; delete (data1)
       
   270 
       
   271   data  = fm->FSDS
       
   272   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   273   data_mod_ann(1,:,:)= dim_avg(yy(month|:,pts|:,year|:))
       
   274   data_mod(1,:,:,:) = yy(:,:,:)  
       
   275 
       
   276 
       
   277 ; data  = fm->LATENT
       
   278   data  = fm->FCEV
       
   279   data1 = fm->FCTR
       
   280   data2 = fm->FGEV
       
   281   data  = data + data1 + data2
       
   282   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   283   data_mod_ann(2,:,:)= dim_avg(yy(month|:,pts|:,year|:))
       
   284   data_mod(2,:,:,:) = yy(:,:,:) 
       
   285   delete (data1)
       
   286   delete (data2)
       
   287  
       
   288 ; data = fm->SENSIBLE
       
   289   data  = fm->FSH
       
   290   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   291   data_mod_ann(3,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
       
   292   data_mod(3,:,:,:) = yy(:,:,:)  
       
   293 
       
   294 else
       
   295 
       
   296   data = fm->NEE
       
   297   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   298   data_mod_ann(0,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
       
   299   data_mod(0,:,:,:) = yy(:,:,:) * factor_flux
       
   300 
       
   301 ; data = fm->NETRAD
       
   302   data = fm->FSDS
       
   303   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   304   data_mod_ann(1,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
       
   305   data_mod(1,:,:,:) = yy(:,:,:) 
       
   306 
       
   307   data = fm->LATENT
       
   308   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   309   data_mod_ann(2,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
       
   310   data_mod(2,:,:,:) = yy(:,:,:) 
       
   311 
       
   312 ; data = fm->SENSIBLE
       
   313   data = fm->FSH
       
   314   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   315   data_mod_ann(3,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
       
   316   data_mod(3,:,:,:) = yy(:,:,:) 
       
   317 
       
   318 end if
       
   319 
       
   320   data = fm->GPP
       
   321   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   322   data_mod_ann(4,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
       
   323   data_mod(4,:,:,:) = yy(:,:,:) * factor_flux 
       
   324 
       
   325   data = fm->ER
       
   326   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   327   data_mod_ann(5,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
       
   328   data_mod(5,:,:,:) = yy(:,:,:) * factor_flux
       
   329 
       
   330   data_mod_long(:,:,:,:) = data_mod(:,:,:,i_long_ob)
       
   331 
       
   332   delete (data_mod)
       
   333   delete (fm) 
       
   334   delete (data)
       
   335   delete (yy)
       
   336 
       
   337 ;*******************************************************************
       
   338 ; for station line plot
       
   339 ;*******************************************************************
       
   340 
       
   341 ; for x-axis in xyplot
       
   342   mon = ispan(1,12,1)
       
   343   mon@long_name = "month"
       
   344 
       
   345   res                   = True               ; plot mods desired
       
   346   res@xyLineThicknesses = (/2.0,2.0/)        ; make 2nd lines thicker
       
   347   res@xyLineColors      = (/"blue","red"/)   ; line color (ob,model)
       
   348 
       
   349   res@tmXBFormat  = "f"                      ; not to add trailing zeros
       
   350 
       
   351 ;-------------------------------------------------------------------------
       
   352 ; Add a boxed legend using the more simple method
       
   353 
       
   354   res@pmLegendDisplayMode    = "Always"
       
   355 ; res@pmLegendWidthF         = 0.1
       
   356   res@pmLegendWidthF         = 0.08
       
   357   res@pmLegendHeightF        = 0.06
       
   358 ; res@pmLegendOrthogonalPosF = -1.17
       
   359 ; res@pmLegendOrthogonalPosF = -1.00  ;(downward)
       
   360   res@pmLegendOrthogonalPosF = -0.30  ;(downward)
       
   361 
       
   362 ; res@pmLegendParallelPosF   =  0.18
       
   363   res@pmLegendParallelPosF   =  0.23  ;(rightward)
       
   364 
       
   365 ; res@lgPerimOn             = False
       
   366   res@lgLabelFontHeightF     = 0.015
       
   367   res@xyExplicitLegendLabels = (/"observed",model_name/)
       
   368 ;-------------------------------------------------------------------
       
   369 ; for panel plot
       
   370   res@gsnFrame     = False                   ; Do not draw plot 
       
   371   res@gsnDraw      = False                   ; Do not advance frame
       
   372 
       
   373   pres                            = True     ; panel plot mods desired
       
   374   pres@gsnPanelYWhiteSpacePercent = 5        ; increase white space around
       
   375                                              ; indiv. plots in panel
       
   376   pres@gsnMaximize                = True     ; fill the page
       
   377 ;-------------------------------------------------------------------
       
   378 
       
   379 ; change longitude from 0-360 to -180-180
       
   380   lon_ob      = where(lon_ob      .gt. 180.,lon_ob-360.,      lon_ob)
       
   381   lon_ob_long = where(lon_ob_long .gt. 180.,lon_ob_long-360., lon_ob_long)
       
   382 
       
   383 ;==============================================================
       
   384 ; get ob data at each site with long observation
       
   385 
       
   386   do n = 0,nstation_long-1
       
   387 
       
   388 ;##################################################################
       
   389 ; hardwired: model    up to year 2004
       
   390 ;            observed up to year 2006
       
   391 
       
   392     year_setback = 0
       
   393 
       
   394     nyear = year_station_long(n)
       
   395 
       
   396     if (year_ob_f_long(n).eq. 2006) then
       
   397        year_setback = 2006 -2004
       
   398     end if
       
   399     if (year_ob_f_long(n).eq. 2005) then
       
   400        year_setback = 2005 -2004
       
   401     end if
       
   402 ;##################################################################
       
   403     
       
   404     ntime = (nyear - year_setback) * nmonth
       
   405 
       
   406     data_ob   = new ((/nfield, nyear, nmonth/),float)
       
   407 
       
   408     dir_f = dir_root + station_long(n)+"/"
       
   409     fil_f = "timeseries_L4_m.nc"
       
   410     fo    = addfile (dir_f+fil_f,"r")
       
   411 
       
   412     data_ob(0,:,:) = fo->NEE_or_fMDS
       
   413     data_ob(1,:,:) = fo->Rg_f
       
   414     data_ob(2,:,:) = fo->LE_f
       
   415     data_ob(3,:,:) = fo->H_f
       
   416     data_ob(4,:,:) = fo->GPP_or_MDS
       
   417     data_ob(5,:,:) = fo->Reco_or
       
   418 
       
   419     data_ob(1,:,:) = data_ob(1,:,:) * factor_rad
       
   420 
       
   421     delete (fo)
       
   422 
       
   423     timeI = new((/ntime/),integer)
       
   424     timeF = new((/ntime/),float)
       
   425     timeI = ispan(1,ntime,1)
       
   426     timeF = year_ob_i_long(n) + (timeI-1)/12.
       
   427     timeF@long_name = "year" 
       
   428 
       
   429     plot_data = new((/2,ntime/),float)
       
   430  
       
   431 ;----------------------------
       
   432 ; for model_vs_ob
       
   433 
       
   434     plot_name = station_long(n)+"_tseries_vs_ob"
       
   435     title = station_long(n)+"("+sprintf("%5.2f",lat_ob_long(n))+","+sprintf("%5.2f",lon_ob_long(n))+")"    
       
   436     res@tiMainString = title
       
   437 
       
   438     wks = gsn_open_wks (plot_type,plot_name)
       
   439     plot=new(nfield,graphic)                         ; create graphic array   
       
   440 
       
   441     i_year_mod_i = year_ob_i_long(n) - 1990 
       
   442     i_year_mod_f = i_year_mod_i + nyear - 1 - year_setback
       
   443 
       
   444     i_year_ob_f =  nyear - year_setback - 1 
       
   445 
       
   446 ;   print (nyear)
       
   447 ;   print (i_year_ob_f)
       
   448 ;   print (i_year_mod_i)
       
   449 ;   print (i_year_mod_f)
       
   450 
       
   451     do i = 0,nfield-1                           
       
   452        plot_data(0,:) = ndtooned(data_ob (i,0:i_year_ob_f,:))
       
   453        plot_data(1,:) = ndtooned(data_mod_long(i,i_year_mod_i:i_year_mod_f,:,n))
       
   454        plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
       
   455        plot(i)=gsn_csm_xy(wks,timeF,plot_data,res)            ; create plot 
       
   456     end do
       
   457    
       
   458     gsn_panel(wks,plot,(/3,2/),pres)                    ; create panel plot
       
   459 
       
   460     delete (wks)  
       
   461     delete (plot)
       
   462 
       
   463     system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
       
   464            "rm "+plot_name+"."+plot_type)
       
   465 
       
   466     delete (data_ob)
       
   467     delete (timeI)    
       
   468     delete (timeF)
       
   469     delete (plot_data)
       
   470 
       
   471  end do
       
   472 
       
   473 ;###################################################################
       
   474 ; for the following tables,
       
   475 ; sort by latitude in decending order (N->S)
       
   476 
       
   477   isort = dim_pqsort(lat_ob_long,-1)
       
   478 
       
   479   station_sort = station_long(isort)
       
   480   year_ob_sort = year_ob_long(isort)
       
   481   lat_ob_sort  = lat_ob_long(isort)
       
   482   lon_ob_sort  = lon_ob_long(isort)
       
   483  
       
   484 ; print(isort)
       
   485 ; print(lat_ob_sort)
       
   486 
       
   487 ;*******************************************************************
       
   488 ; html table of site: observed
       
   489 ;*******************************************************************
       
   490   output_html = "tseries_vs_ob.html"
       
   491 
       
   492   header = (/"<HTML>" \
       
   493             ,"<HEAD>" \
       
   494             ,"<TITLE>CLAMP metrics</TITLE>" \
       
   495             ,"</HEAD>" \
       
   496             ,"<H1>Timeseries at Site: "+model_name+" vs Observation</H1>" \
       
   497             /) 
       
   498   footer = "</HTML>"
       
   499 
       
   500   table_header = (/ \
       
   501         "<table border=1 cellspacing=0 cellpadding=3 width=60%>" \
       
   502        ,"<tr>" \
       
   503        ,"   <th bgcolor=DDDDDD >Site Name</th>" \
       
   504        ,"   <th bgcolor=DDDDDD >Latitude</th>" \
       
   505        ,"   <th bgcolor=DDDDDD >Longitude</th>" \
       
   506        ,"   <th bgcolor=DDDDDD >Observed</th>" \ 
       
   507        ,"</tr>" \
       
   508        /)
       
   509   table_footer = "</table>"
       
   510   row_header = "<tr>"
       
   511   row_footer = "</tr>"
       
   512 
       
   513   lines = new(50000,string)
       
   514   nline = 0
       
   515 
       
   516   set_line(lines,nline,header)
       
   517   set_line(lines,nline,table_header)
       
   518 ;-----------------------------------------------
       
   519 ; row of table
       
   520   
       
   521   do n = 0,nstation_long-1
       
   522 
       
   523      set_line(lines,nline,row_header)
       
   524 
       
   525      txt0 = station_sort(n)
       
   526      txt1 = sprintf("%5.2f", lat_ob_sort(n))
       
   527      txt2 = sprintf("%5.2f", lon_ob_sort(n))
       
   528      txt3 = year_ob_sort(n)
       
   529 
       
   530      set_line(lines,nline,"<th><a href="+txt0+"_tseries_vs_ob.png>"+txt0+"</a></th>")
       
   531      set_line(lines,nline,"<th>"+txt1+"</th>")
       
   532      set_line(lines,nline,"<th>"+txt2+"</th>")
       
   533      set_line(lines,nline,"<th>"+txt3+"</th>")
       
   534 
       
   535      set_line(lines,nline,row_footer)
       
   536   end do
       
   537 ;-----------------------------------------------
       
   538   set_line(lines,nline,table_footer)
       
   539   set_line(lines,nline,footer) 
       
   540 
       
   541 ; Now write to an HTML file.
       
   542   idx = ind(.not.ismissing(lines))
       
   543   if(.not.any(ismissing(idx))) then
       
   544     asciiwrite(output_html,lines(idx))
       
   545   else
       
   546    print ("error?")
       
   547   end if
       
   548   delete (idx)
       
   549 
       
   550   delete (isort)
       
   551   delete (station_sort)
       
   552   delete (year_ob_sort)
       
   553   delete (lat_ob_sort)
       
   554   delete (lon_ob_sort)
       
   555 
       
   556 ;************************************************************
       
   557 ; compute annual cycle correlation coef and M score
       
   558 ;************************************************************
       
   559 
       
   560  score_max = 1.
       
   561 
       
   562  ccr     = new ((/nstation, nfield/),float)
       
   563  M_score = new ((/nstation, nfield/),float) 
       
   564 
       
   565  do n=0,nstation-1
       
   566  do m=0,nfield-1   
       
   567     ccr(n,m) = esccr(data_ob_ann(m,:,n),data_mod_ann(m,:,n),0)
       
   568     bias = sum(abs(data_mod_ann(m,:,n)-data_ob_ann(m,:,n))/(abs(data_mod_ann(m,:,n))+abs(data_ob_ann(m,:,n))))
       
   569     M_score(n,m) = (1. -(bias/nmonth)) * score_max
       
   570  end do
       
   571  end do
       
   572 
       
   573  M_nee = avg(M_score(:,0))
       
   574  M_rad = avg(M_score(:,1))
       
   575  M_lh  = avg(M_score(:,2))
       
   576  M_sh  = avg(M_score(:,3))
       
   577  M_gpp = avg(M_score(:,4))
       
   578  M_er  = avg(M_score(:,5))
       
   579  M_all = M_nee+ M_rad +M_lh + M_sh + M_gpp + M_er
       
   580 
       
   581  M_ameriflux_nee = sprintf("%.2f", M_nee)
       
   582  M_ameriflux_rad = sprintf("%.2f", M_rad)
       
   583  M_ameriflux_lh  = sprintf("%.2f", M_lh )
       
   584  M_ameriflux_sh  = sprintf("%.2f", M_sh )
       
   585  M_ameriflux_gpp = sprintf("%.2f", M_gpp)
       
   586  M_ameriflux_er  = sprintf("%.2f", M_er )
       
   587  M_ameriflux_all = sprintf("%.2f", M_all)
       
   588 
       
   589 ;*******************************************************************
       
   590 ; for station line plot
       
   591 ;*******************************************************************
       
   592 
       
   593 ; for x-axis in xyplot
       
   594   mon = ispan(1,12,1)
       
   595   mon@long_name = "month"
       
   596 
       
   597 ;-------------------------------------------------------------------
       
   598 
       
   599   plot_data   = new((/2,nmonth/),float)
       
   600   plot_data!0 = "case"
       
   601   plot_data!1 = "month"
       
   602 
       
   603   do n = 0,nstation-1
       
   604 ;----------------------------
       
   605 ; for observed
       
   606 
       
   607     plot_name = station(n)+"_ob"    
       
   608     title = station(n)+"("+sprintf("%5.2f",lat_ob(n))+","+sprintf("%5.2f",lon_ob(n))+")"
       
   609     res@tiMainString = title
       
   610 
       
   611     wks = gsn_open_wks (plot_type,plot_name)
       
   612     plot=new(nfield,graphic)                        ; create graphic array   
       
   613 
       
   614     do i = 0,nfield-1                           
       
   615        plot_data(0,:) = (/data_ob_ann(i,:,n)/)
       
   616        plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
       
   617        plot(i)=gsn_csm_xy(wks,mon,plot_data(0,:),res)    ; create plot 
       
   618     end do
       
   619 
       
   620     gsn_panel(wks,plot,(/3,2/),pres)                 ; create panel plot
       
   621 
       
   622     delete (wks)  
       
   623     delete (plot)
       
   624 
       
   625     system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
       
   626            "rm "+plot_name+"."+plot_type)
       
   627 
       
   628 ;----------------------------
       
   629 ; for model_vs_ob
       
   630 
       
   631     plot_name = station(n)+"_model_vs_ob"
       
   632     title = station(n)+"("+sprintf("%5.2f",lat_ob(n))+","+sprintf("%5.2f",lon_ob(n))+")"    
       
   633     res@tiMainString = title
       
   634 
       
   635     wks = gsn_open_wks (plot_type,plot_name)
       
   636     plot=new(nfield,graphic)                         ; create graphic array   
       
   637 
       
   638     do i = 0,nfield-1                           
       
   639        plot_data(0,:) = (/data_ob_ann(i,:,n)/)
       
   640        plot_data(1,:) = (/data_mod_ann(i,:,n)/)
       
   641        plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
       
   642        plot(i)=gsn_csm_xy(wks,mon,plot_data,res)     ; create plot 
       
   643     end do
       
   644    
       
   645     gsn_panel(wks,plot,(/3,2/),pres)                 ; create panel plot
       
   646 
       
   647     delete (wks)  
       
   648     delete (plot)
       
   649 
       
   650     system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
       
   651            "rm "+plot_name+"."+plot_type)
       
   652  end do
       
   653 
       
   654 ;###################################################################
       
   655 ; for the following tables,
       
   656 ; sort by latitude in decending order (N->S)
       
   657 ; sort by lat in decending order (N->S)
       
   658 
       
   659   isort = dim_pqsort(lat_ob,-1)
       
   660 
       
   661   station_sort = station(isort)
       
   662   year_ob_sort = year_ob(isort)
       
   663   lat_ob_sort  = lat_ob(isort)
       
   664   lon_ob_sort  = lon_ob(isort)
       
   665   M_score_sort = M_score(isort,:)
       
   666  
       
   667 ; print(isort)
       
   668 ; print(lat_ob_sort)
       
   669 ;###################################################################
       
   670 ;*******************************************************************
       
   671 ; html table of site: observed
       
   672 ;*******************************************************************
       
   673   output_html = "line_ob.html"
       
   674 
       
   675   header = (/"<HTML>" \
       
   676             ,"<HEAD>" \
       
   677             ,"<TITLE>CLAMP metrics</TITLE>" \
       
   678             ,"</HEAD>" \
       
   679             ,"<H1>Energy at Site: Observation</H1>" \
       
   680             /) 
       
   681   footer = "</HTML>"
       
   682 
       
   683   table_header = (/ \
       
   684         "<table border=1 cellspacing=0 cellpadding=3 width=60%>" \
       
   685        ,"<tr>" \
       
   686        ,"   <th bgcolor=DDDDDD >Site Name</th>" \
       
   687        ,"   <th bgcolor=DDDDDD >Latitude</th>" \
       
   688        ,"   <th bgcolor=DDDDDD >Longitude</th>" \
       
   689        ,"   <th bgcolor=DDDDDD >Observed</th>" \ 
       
   690        ,"</tr>" \
       
   691        /)
       
   692   table_footer = "</table>"
       
   693   row_header = "<tr>"
       
   694   row_footer = "</tr>"
       
   695 
       
   696   lines = new(50000,string)
       
   697   nline = 0
       
   698 
       
   699   set_line(lines,nline,header)
       
   700   set_line(lines,nline,table_header)
       
   701 ;-----------------------------------------------
       
   702 ; row of table
       
   703   
       
   704   do n = 0,nstation-1
       
   705      set_line(lines,nline,row_header)
       
   706 
       
   707      txt0 = station_sort(n)
       
   708      txt1 = sprintf("%5.2f", lat_ob_sort(n))
       
   709      txt2 = sprintf("%5.2f", lon_ob_sort(n))
       
   710      txt3 = year_ob_sort(n)
       
   711 
       
   712      set_line(lines,nline,"<th><a href="+txt0+"_ob.png>"+txt0+"</a></th>")
       
   713      set_line(lines,nline,"<th>"+txt1+"</th>")
       
   714      set_line(lines,nline,"<th>"+txt2+"</th>")
       
   715      set_line(lines,nline,"<th>"+txt3+"</th>")
       
   716 
       
   717      set_line(lines,nline,row_footer)
       
   718   end do
       
   719 ;-----------------------------------------------
       
   720   set_line(lines,nline,table_footer)
       
   721   set_line(lines,nline,footer) 
       
   722 
       
   723 ; Now write to an HTML file.
       
   724   idx = ind(.not.ismissing(lines))
       
   725   if(.not.any(ismissing(idx))) then
       
   726     asciiwrite(output_html,lines(idx))
       
   727   else
       
   728    print ("error?")
       
   729   end if
       
   730   delete (idx)
       
   731 
       
   732 ;*******************************************************************
       
   733 ; score and line table : model vs observed
       
   734 ;*******************************************************************
       
   735   output_html = "score+line_vs_ob.html"
       
   736 
       
   737   header = (/"<HTML>" \
       
   738             ,"<HEAD>" \
       
   739             ,"<TITLE>CLAMP metrics</TITLE>" \
       
   740             ,"</HEAD>" \
       
   741             ,"<H1>Energy at Site: Model "+model_name+"</H1>" \
       
   742             /) 
       
   743   footer = "</HTML>"
       
   744 
       
   745   delete (table_header)
       
   746   table_header = (/ \
       
   747         "<table border=1 cellspacing=0 cellpadding=3 width=100%>" \
       
   748        ,"<tr>" \
       
   749        ,"   <th bgcolor=DDDDDD >Site Name</th>" \
       
   750        ,"   <th bgcolor=DDDDDD >Latitude</th>" \
       
   751        ,"   <th bgcolor=DDDDDD >Longitude</th>" \
       
   752        ,"   <th bgcolor=DDDDDD >Observed</th>" \
       
   753        ,"   <th bgcolor=DDDDDD >NEE Flux</th>" \
       
   754        ,"   <th bgcolor=DDDDDD >Shortwave <br> Incoming</th>" \
       
   755        ,"   <th bgcolor=DDDDDD >Latent Heat</th>" \
       
   756        ,"   <th bgcolor=DDDDDD >Sensible Heat</th>" \
       
   757        ,"   <th bgcolor=DDDDDD >GPP Flux</th>" \
       
   758        ,"   <th bgcolor=DDDDDD >Respiration</th>" \
       
   759        ,"   <th bgcolor=DDDDDD >Average</th>" \
       
   760        ,"</tr>" \
       
   761        /)
       
   762   table_footer = "</table>"
       
   763   row_header = "<tr>"
       
   764   row_footer = "</tr>"
       
   765 
       
   766   lines = new(50000,string)
       
   767   nline = 0
       
   768 
       
   769   set_line(lines,nline,header)
       
   770   set_line(lines,nline,table_header)
       
   771 ;-----------------------------------------------
       
   772 ; row of table
       
   773   
       
   774   do n = 0,nstation-1
       
   775      set_line(lines,nline,row_header)
       
   776 
       
   777      txt0  = station_sort(n)
       
   778      txt1  = sprintf("%5.2f", lat_ob_sort(n))
       
   779      txt2  = sprintf("%5.2f", lon_ob_sort(n))
       
   780      txt3  = year_ob_sort(n)
       
   781      txt4  = sprintf("%5.2f", M_score_sort(n,0))
       
   782      txt5  = sprintf("%5.2f", M_score_sort(n,1))
       
   783      txt6  = sprintf("%5.2f", M_score_sort(n,2))
       
   784      txt7  = sprintf("%5.2f", M_score_sort(n,3))
       
   785      txt8  = sprintf("%5.2f", M_score_sort(n,4))
       
   786      txt9  = sprintf("%5.2f", M_score_sort(n,5))
       
   787      txt10 = sprintf("%5.2f", avg(M_score_sort(n,:)))
       
   788 
       
   789      set_line(lines,nline,"<th><a href="+txt0+"_model_vs_ob.png>"+txt0+"</a></th>")
       
   790      set_line(lines,nline,"<th>"+txt1+"</th>")
       
   791      set_line(lines,nline,"<th>"+txt2+"</th>")
       
   792      set_line(lines,nline,"<th>"+txt3+"</th>")
       
   793      set_line(lines,nline,"<th>"+txt4+"</th>")
       
   794      set_line(lines,nline,"<th>"+txt5+"</th>")
       
   795      set_line(lines,nline,"<th>"+txt6+"</th>")
       
   796      set_line(lines,nline,"<th>"+txt7+"</th>")
       
   797      set_line(lines,nline,"<th>"+txt8+"</th>")
       
   798      set_line(lines,nline,"<th>"+txt9+"</th>")
       
   799      set_line(lines,nline,"<th>"+txt10+"</th>")
       
   800 
       
   801      set_line(lines,nline,row_footer)
       
   802   end do
       
   803 
       
   804 ; last row, summary
       
   805   set_line(lines,nline,row_header)
       
   806 
       
   807   txt0  = "All_"+sprintf("%.0f", nstation)
       
   808   txt1  = "-"
       
   809   txt2  = "-"
       
   810   txt3  = "-"
       
   811   txt4  = M_ameriflux_nee
       
   812   txt5  = M_ameriflux_rad
       
   813   txt6  = M_ameriflux_lh
       
   814   txt7  = M_ameriflux_sh
       
   815   txt8  = M_ameriflux_gpp
       
   816   txt9  = M_ameriflux_er
       
   817   txt10 = M_ameriflux_all
       
   818 
       
   819   set_line(lines,nline,"<th>"+txt0+"</th>")
       
   820   set_line(lines,nline,"<th>"+txt1+"</th>")
       
   821   set_line(lines,nline,"<th>"+txt2+"</th>")
       
   822   set_line(lines,nline,"<th>"+txt3+"</th>")
       
   823   set_line(lines,nline,"<th>"+txt4+"</th>")
       
   824   set_line(lines,nline,"<th>"+txt5+"</th>")
       
   825   set_line(lines,nline,"<th>"+txt6+"</th>")
       
   826   set_line(lines,nline,"<th>"+txt7+"</th>")
       
   827   set_line(lines,nline,"<th>"+txt8+"</th>")
       
   828   set_line(lines,nline,"<th>"+txt9+"</th>")
       
   829   set_line(lines,nline,"<th>"+txt10+"</th>")
       
   830 
       
   831   set_line(lines,nline,row_footer)
       
   832 ;-----------------------------------------------
       
   833   set_line(lines,nline,table_footer)
       
   834   set_line(lines,nline,footer) 
       
   835 
       
   836 ; Now write to an HTML file.
       
   837   idx = ind(.not.ismissing(lines))
       
   838   if(.not.any(ismissing(idx))) then
       
   839     asciiwrite(output_html,lines(idx))
       
   840   else
       
   841    print ("error?")
       
   842   end if
       
   843   delete (idx)
       
   844 
       
   845 ;**************************************************************************************
       
   846 ; update score
       
   847 ;**************************************************************************************
       
   848  
       
   849   if (isvar("compare")) then
       
   850      system("sed -e '1,/M_ameriflux_nee/s/M_ameriflux_nee/"+M_ameriflux_nee+"/' "+html_name2+" > "+html_new2+";"+ \
       
   851             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   852             "sed -e '1,/M_ameriflux_rad/s/M_ameriflux_rad/"+M_ameriflux_rad+"/' "+html_name2+" > "+html_new2+";"+ \
       
   853             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   854             "sed -e '1,/M_ameriflux_lh/s/M_ameriflux_lh/"+M_ameriflux_lh+"/' "+html_name2+" > "+html_new2+";"+ \
       
   855             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   856             "sed -e '1,/M_ameriflux_sh/s/M_ameriflux_sh/"+M_ameriflux_sh+"/' "+html_name2+" > "+html_new2+";"+ \
       
   857             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   858             "sed -e '1,/M_ameriflux_gpp/s/M_ameriflux_gpp/"+M_ameriflux_gpp+"/' "+html_name2+" > "+html_new2+";"+ \
       
   859             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   860             "sed -e '1,/M_ameriflux_er/s/M_ameriflux_er/"+M_ameriflux_er+"/' "+html_name2+" > "+html_new2+";"+ \
       
   861             "mv -f "+html_new2+" "+html_name2)
       
   862   end if
       
   863 
       
   864   system("sed s#M_ameriflux_nee#"+M_ameriflux_nee+"# "+html_name+" > "+html_new+";"+ \
       
   865          "mv -f "+html_new+" "+html_name+";"+ \
       
   866          "sed s#M_ameriflux_rad#"+M_ameriflux_rad+"# "+html_name+" > "+html_new+";"+ \
       
   867          "mv -f "+html_new+" "+html_name+";"+ \
       
   868          "sed s#M_ameriflux_lh#"+M_ameriflux_lh+"# "+html_name+" > "+html_new+";"+ \
       
   869          "mv -f "+html_new+" "+html_name+";"+ \
       
   870          "sed s#M_ameriflux_sh#"+M_ameriflux_sh+"# "+html_name+" > "+html_new+";"+ \
       
   871          "mv -f "+html_new+" "+html_name+";"+ \
       
   872          "sed s#M_ameriflux_gpp#"+M_ameriflux_gpp+"# "+html_name+" > "+html_new+";"+ \
       
   873          "mv -f "+html_new+" "+html_name+";"+ \
       
   874          "sed s#M_ameriflux_er#"+M_ameriflux_er+"# "+html_name+" > "+html_new+";"+ \
       
   875          "mv -f "+html_new+" "+html_name) 
       
   876 
       
   877 ;***************************************************************************
       
   878 ; add total score and write to file
       
   879 ;***************************************************************************
       
   880   M_total = M_ameriflux_all
       
   881 
       
   882   asciiwrite("M_save.ameriflux", M_total)
       
   883 
       
   884 ;***************************************************************************
       
   885 ; output plot and html
       
   886 ;***************************************************************************
       
   887   output_dir = model_name+"/ameriflux"
       
   888 
       
   889   system("mv *.png *.html " + output_dir) 
       
   890 ;***************************************************************************
       
   891 
       
   892 end
       
   893