ameriflux/11.ameriflux.ncl
changeset 0 0c6405ab2ff4
equal deleted inserted replaced
-1:000000000000 0:438a96245479
       
     1 ;************************************************************
       
     2 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"
       
     3 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl"
       
     4 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"
       
     5 ;************************************************************
       
     6 procedure set_line(lines:string,nline:integer,newlines:string) 
       
     7 begin
       
     8 ; add line to ascci/html file
       
     9     
       
    10   nnewlines = dimsizes(newlines)
       
    11   if(nline+nnewlines-1.ge.dimsizes(lines))
       
    12     print("set_line: bad index, not setting anything.") 
       
    13     return
       
    14   end if 
       
    15   lines(nline:nline+nnewlines-1) = newlines
       
    16 ;  print ("lines = " + lines(nline:nline+nnewlines-1))
       
    17   nline = nline + nnewlines
       
    18   return 
       
    19 end
       
    20 ;*************************************************************
       
    21 begin
       
    22 
       
    23   plot_type     = "ps"
       
    24   plot_type_new = "png"
       
    25 
       
    26 ;------------------------------------------------------
       
    27 ; edit table.html of current model for movel1_vs_model2
       
    28 
       
    29  if (isvar("compare")) then
       
    30     html_name2 = compare+"/table.html"  
       
    31     html_new2  = html_name2 +".new"
       
    32  end if
       
    33 
       
    34 ;------------------------------------------------------
       
    35 ; edit table.html for current model
       
    36 
       
    37  html_name = model_name+"/table.html"  
       
    38  html_new  = html_name +".new"
       
    39 
       
    40 ;------------------------------------------------------
       
    41 
       
    42   nmonth = 12
       
    43 
       
    44 ; for nee, gpp, and ar
       
    45 ; observed unit is gC/m2/day
       
    46 ; model    unit is gC/m2/s
       
    47 ; to change to observed unit,
       
    48 
       
    49   factor_flux = 86400.
       
    50   
       
    51 ; for incident solar radiation,
       
    52 ; observed Rg_f unit is MJ/m2/day
       
    53 ; model (FSDS)  unit is  W/m2
       
    54 ; to change to model unit,
       
    55 
       
    56   factor_rad = 1.e6/86400.
       
    57 
       
    58 ;************************************************
       
    59 ; observed data info
       
    60 ;************************************************
       
    61 
       
    62  station = (/"ARM_Oklahoma" \
       
    63             ,"ARM_Oklahoma_burn" \
       
    64             ,"ARM_Oklahoma_control" \
       
    65             ,"Atqasuk" \
       
    66             ,"Audubon" \
       
    67             ,"AustinCary" \
       
    68             ,"Bartlett" \
       
    69             ,"Bondville" \
       
    70             ,"Brookings" \
       
    71             ,"Donaldson" \
       
    72             ,"Duke_Forest_Hardwoods" \
       
    73             ,"Duke_Forest_Open_Field" \
       
    74             ,"Duke_Forest_Pine" \
       
    75             ,"Fermi_Ag" \
       
    76             ,"Fermi_Prairie" \
       
    77             ,"Flagstaff_Managed" \
       
    78             ,"Flagstaff_Unmanaged" \
       
    79             ,"Flagstaff_Wildfire" \
       
    80             ,"FortPeck" \
       
    81             ,"FreemanRanch_mesquite" \
       
    82             ,"Goodwin_Creek" \
       
    83             ,"HarvardForest" \
       
    84             ,"HarvardForestHemlock" \
       
    85             ,"HowlandForestMain" \
       
    86             ,"HowlandForestWest" \
       
    87             ,"Ivotuk" \
       
    88             ,"KendallGrasslands" \
       
    89             ,"KennedySpaceCenterPine" \
       
    90             ,"KennedySpaceCenterScrub" \
       
    91             ,"LittleProspect" \
       
    92             ,"LostCreek" \
       
    93             ,"Mead-irrigated" \
       
    94             ,"Mead-irrigated-rotation" \
       
    95             ,"Mead-rainfed" \
       
    96             ,"Metolius_2nd_YoungPonderosaPine" \
       
    97             ,"MetoliusEyerly" \
       
    98             ,"MetoliusIntermediatePine" \
       
    99             ,"MetoliusOldPonderosaPine" \
       
   100             ,"MissouriOzark" \
       
   101             ,"Mize" \
       
   102             ,"MorganMonroe" \
       
   103             ,"NiwotRidge" \
       
   104             ,"NorthCarolina_cc" \
       
   105             ,"NorthCarolina_lp" \
       
   106             ,"ParkFalls" \
       
   107             ,"Rayonier" \
       
   108             ,"SantaRita" \
       
   109             ,"SkyOaks_Old" \
       
   110             ,"SkyOaks_PostFire" \
       
   111             ,"SkyOaks_Young" \
       
   112             ,"SylvaniaWilderness" \
       
   113             ,"Toledo" \
       
   114             ,"Tonzi" \
       
   115             ,"UCI_1850" \
       
   116             ,"UCI_1930" \
       
   117             ,"UCI_1964" \
       
   118             ,"UCI_1964wet" \
       
   119             ,"UCI_1981" \
       
   120             ,"UCI_1989" \
       
   121             ,"UCI_1998" \
       
   122             ,"UMBS" \
       
   123             ,"Vaira" \
       
   124             ,"WalkerBranch" \
       
   125             ,"WillowCreek" \
       
   126             ,"WindRiver" \
       
   127             ,"Wisconsin_ihw" \
       
   128             ,"Wisconsin_irp" \
       
   129             ,"Wisconsin_mrp" \
       
   130             ,"Wisconsin_myjp" \
       
   131             ,"Wisconsin_pb" \
       
   132             ,"Wisconsin_rpcc" \
       
   133             ,"Wisconsin_yhw" \
       
   134             ,"Wisconsin_yjp" \
       
   135             ,"Wisconsin_yrp" \
       
   136             /)
       
   137 
       
   138  field   = (/"NEE Flux" \
       
   139             ,"Shortwave Incoming" \
       
   140             ,"Latent Heat" \
       
   141             ,"Sensible Heat" \
       
   142             ,"GPP Flux" \
       
   143             ,"Respiration" \
       
   144             /)
       
   145 
       
   146  field_unit = (/"gC/m2/day" \
       
   147                ,"W/m2" \
       
   148                ,"W/m2" \
       
   149                ,"W/m2" \
       
   150                ,"gC/m2/day" \
       
   151                ,"gC/m2/day" \
       
   152                /)
       
   153 
       
   154  nstation = dimsizes(station)
       
   155  nfield   = dimsizes(field)
       
   156 
       
   157 ;========================================================================
       
   158 ; get observed info: number of year, first/last year, lat, lon
       
   159 ; and annual data
       
   160 
       
   161  dir_root = diro + "ameriflux/"
       
   162 
       
   163  year_station = new ((/nstation/),integer) ; number of year
       
   164  year_ob      = new ((/nstation/),string)  ; observed year
       
   165  year_ob_i    = new ((/nstation/),integer) ; first year
       
   166  year_ob_f    = new ((/nstation/),integer) ; last year
       
   167  lat_ob       = new ((/nstation/),float)   ; latitude
       
   168  lon_ob       = new ((/nstation/),float)   ; longitude 
       
   169 
       
   170  data_ob_ann  = new ((/nfield, nmonth, nstation/),float)
       
   171 
       
   172  do n = 0, nstation-1
       
   173 
       
   174     dir_f = dir_root + station(n)+"/"
       
   175     fil_f = "timeseries_L4_m.nc"
       
   176     fo   = addfile (dir_f+fil_f,"r")
       
   177  
       
   178     lat_ob(n) = fo->lat
       
   179     lon_ob(n) = fo->lon
       
   180 
       
   181     year      = fo->year
       
   182 
       
   183     year_station(n) = dimsizes(year)
       
   184     year_ob_i(n)    = year(0)
       
   185     year_ob_f(n)    = year(year_station(n)-1)
       
   186     year_ob(n)      = year_ob_i(n) + "-" + year_ob_f(n)
       
   187  
       
   188     delete (year)
       
   189  
       
   190     data = fo->NEE_or_fMDS
       
   191     data_ob_ann(0,:,n) = dim_avg(data(month|:,year|:))
       
   192 
       
   193     data = fo->Rg_f
       
   194     data_ob_ann(1,:,n) = dim_avg(data(month|:,year|:)) * factor_rad
       
   195 
       
   196     data = fo->LE_f
       
   197     data_ob_ann(2,:,n) = dim_avg(data(month|:,year|:))
       
   198 
       
   199     data = fo->H_f
       
   200     data_ob_ann(3,:,n) = dim_avg(data(month|:,year|:))
       
   201 
       
   202     data = fo->GPP_or_MDS
       
   203     data_ob_ann(4,:,n) = dim_avg(data(month|:,year|:))
       
   204 
       
   205     data = fo->Reco_or
       
   206     data_ob_ann(5,:,n) = dim_avg(data(month|:,year|:))
       
   207 
       
   208     delete (data) 
       
   209     delete (fo)   
       
   210  end do
       
   211 
       
   212 ;--------------------------------------------------------------
       
   213 ; find (# of year observed) >=4 and year_ob_i <= 2001
       
   214 
       
   215  i_long_ob = ind(year_station .ge. 4 .and. year_ob_i .le. 2001)
       
   216  
       
   217  station_long      = station(i_long_ob)
       
   218  lat_ob_long       = lat_ob(i_long_ob)
       
   219  lon_ob_long       = lat_ob(i_long_ob)
       
   220  year_ob_long      = year_ob(i_long_ob)
       
   221  year_ob_i_long    = year_ob_i(i_long_ob)
       
   222  year_ob_f_long    = year_ob_f(i_long_ob)
       
   223  year_station_long = year_station(i_long_ob)
       
   224 
       
   225  nstation_long     = dimsizes(station_long)
       
   226 
       
   227 ;=========================================================
       
   228 ;   get model data at observed lat-lon
       
   229 
       
   230     fm   = addfile (dirm+film8,"r")
       
   231 
       
   232     xm   = fm->lon
       
   233     ym   = fm->lat 
       
   234     date = fm->date
       
   235 
       
   236     date_dim = dimsizes(date)
       
   237     nyear  = date_dim(0)
       
   238 
       
   239     data_mod      = new ((/nfield,nyear,nmonth,nstation/),float)
       
   240     data_mod_ann  = new ((/nfield,nmonth,nstation/),float)
       
   241     data_mod_long = new ((/nfield,nyear,nmonth,nstation_long/),float)
       
   242 
       
   243 ;   change to unit of observed (u mol/m2/s)
       
   244 ;   Model_units [=] gC/m2/s
       
   245 ;   12. = molecular weight of C
       
   246 ;   u mol = 1e-6 mol
       
   247 
       
   248     factor = 1.e6 /12.
       
   249 
       
   250 ;------------------------------------------------------------
       
   251 ;   interpolate model data into observed station
       
   252 ;   note: model is 0-360E, 90S-90N
       
   253 
       
   254 ;   to be able to handle observation at (-89.98,-24.80)
       
   255     ym(0) = -90.
       
   256 ;------------------------------------------------------------  
       
   257 
       
   258 if (ENERGY .eq. "old") then
       
   259 
       
   260   data = fm->NEE
       
   261   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   262   data_mod_ann(0,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
       
   263   data_mod(0,:,:,:) = yy(:,:,:) * factor_flux
       
   264 
       
   265 ;;data  = fm->NETRAD
       
   266 ; data  = fm->FSA
       
   267 ; data1 = fm->FIRA
       
   268 ; data  = data - data1
       
   269 ; delete (data1)
       
   270 
       
   271   data  = fm->FSDS
       
   272   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   273   data_mod_ann(1,:,:)= dim_avg(yy(month|:,pts|:,year|:))
       
   274   data_mod(1,:,:,:) = yy(:,:,:)  
       
   275 
       
   276 
       
   277 ; data  = fm->LATENT
       
   278   data  = fm->FCEV
       
   279   data1 = fm->FCTR
       
   280   data2 = fm->FGEV
       
   281   data  = data + data1 + data2
       
   282   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   283   data_mod_ann(2,:,:)= dim_avg(yy(month|:,pts|:,year|:))
       
   284   data_mod(2,:,:,:) = yy(:,:,:) 
       
   285   delete (data1)
       
   286   delete (data2)
       
   287  
       
   288 ; data = fm->SENSIBLE
       
   289   data  = fm->FSH
       
   290   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   291   data_mod_ann(3,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
       
   292   data_mod(3,:,:,:) = yy(:,:,:)  
       
   293 
       
   294 else
       
   295 
       
   296   data = fm->NEE
       
   297   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   298   data_mod_ann(0,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
       
   299   data_mod(0,:,:,:) = yy(:,:,:) * factor_flux
       
   300 
       
   301 ; data = fm->NETRAD
       
   302   data = fm->FSDS
       
   303   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   304   data_mod_ann(1,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
       
   305   data_mod(1,:,:,:) = yy(:,:,:) 
       
   306 
       
   307   data = fm->LATENT
       
   308   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   309   data_mod_ann(2,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
       
   310   data_mod(2,:,:,:) = yy(:,:,:) 
       
   311 
       
   312 ; data = fm->SENSIBLE
       
   313   data = fm->FSH
       
   314   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   315   data_mod_ann(3,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
       
   316   data_mod(3,:,:,:) = yy(:,:,:) 
       
   317 
       
   318 end if
       
   319 
       
   320   data = fm->GPP
       
   321   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   322   data_mod_ann(4,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
       
   323   data_mod(4,:,:,:) = yy(:,:,:) * factor_flux 
       
   324 
       
   325   data = fm->ER
       
   326   yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
       
   327   data_mod_ann(5,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
       
   328   data_mod(5,:,:,:) = yy(:,:,:) * factor_flux
       
   329 
       
   330   data_mod_long(:,:,:,:) = data_mod(:,:,:,i_long_ob)
       
   331 
       
   332   delete (data_mod)
       
   333   delete (fm) 
       
   334   delete (data)
       
   335   delete (yy)
       
   336 
       
   337   asciiwrite(station(0)+"_ob.txt", data_ob_ann(:,:,0))
       
   338   asciiwrite(station(0)+"_"+model_name+".txt", data_mod_ann(:,:,0))
       
   339 
       
   340   asciiwrite(station(7)+"_ob.txt", data_ob_ann(:,:,7))
       
   341   asciiwrite(station(7)+"_"+model_name+".txt", data_mod_ann(:,:,7))
       
   342 
       
   343   asciiwrite(station(21)+"_ob.txt", data_ob_ann(:,:,21))
       
   344   asciiwrite(station(21)+"_"+model_name+".txt", data_mod_ann(:,:,21))
       
   345 
       
   346   asciiwrite(station(44)+"_ob.txt", data_ob_ann(:,:,44))
       
   347   asciiwrite(station(44)+"_"+model_name+".txt", data_mod_ann(:,:,44))
       
   348 
       
   349   asciiwrite(station(50)+"_ob.txt", data_ob_ann(:,:,50))
       
   350   asciiwrite(station(50)+"_"+model_name+".txt", data_mod_ann(:,:,50))
       
   351 
       
   352   asciiwrite(station(54)+"_ob.txt", data_ob_ann(:,:,54))
       
   353   asciiwrite(station(54)+"_"+model_name+".txt", data_mod_ann(:,:,54))
       
   354 
       
   355   asciiwrite(station(62)+"_ob.txt", data_ob_ann(:,:,62))
       
   356   asciiwrite(station(62)+"_"+model_name+".txt", data_mod_ann(:,:,62))
       
   357 exit
       
   358 
       
   359 ;*******************************************************************
       
   360 ; for station line plot
       
   361 ;*******************************************************************
       
   362 
       
   363 ; for x-axis in xyplot
       
   364   mon = ispan(1,12,1)
       
   365   mon@long_name = "month"
       
   366 
       
   367   res                   = True               ; plot mods desired
       
   368   res@xyLineThicknesses = (/2.0,2.0/)        ; make 2nd lines thicker
       
   369   res@xyLineColors      = (/"blue","red"/)   ; line color (ob,model)
       
   370 
       
   371   res@tmXBFormat  = "f"                      ; not to add trailing zeros
       
   372 
       
   373 ;-------------------------------------------------------------------------
       
   374 ; Add a boxed legend using the more simple method
       
   375 
       
   376   res@pmLegendDisplayMode    = "Always"
       
   377 ; res@pmLegendWidthF         = 0.1
       
   378   res@pmLegendWidthF         = 0.08
       
   379   res@pmLegendHeightF        = 0.06
       
   380 ; res@pmLegendOrthogonalPosF = -1.17
       
   381 ; res@pmLegendOrthogonalPosF = -1.00  ;(downward)
       
   382   res@pmLegendOrthogonalPosF = -0.30  ;(downward)
       
   383 
       
   384 ; res@pmLegendParallelPosF   =  0.18
       
   385   res@pmLegendParallelPosF   =  0.23  ;(rightward)
       
   386 
       
   387 ; res@lgPerimOn             = False
       
   388   res@lgLabelFontHeightF     = 0.015
       
   389   res@xyExplicitLegendLabels = (/"observed",model_name/)
       
   390 ;-------------------------------------------------------------------
       
   391 ; for panel plot
       
   392   res@gsnFrame     = False                   ; Do not draw plot 
       
   393   res@gsnDraw      = False                   ; Do not advance frame
       
   394 
       
   395   pres                            = True     ; panel plot mods desired
       
   396   pres@gsnPanelYWhiteSpacePercent = 5        ; increase white space around
       
   397                                              ; indiv. plots in panel
       
   398   pres@gsnMaximize                = True     ; fill the page
       
   399 ;-------------------------------------------------------------------
       
   400 
       
   401 ;==============================================================
       
   402 ; get ob data at each site with long observation
       
   403 
       
   404   do n = 0,nstation_long-1
       
   405 
       
   406 ;##################################################################
       
   407 ; hardwired: model    up to year 2004
       
   408 ;            observed up to year 2006
       
   409 
       
   410     year_setback = 0
       
   411 
       
   412     nyear = year_station_long(n)
       
   413 
       
   414     if (year_ob_f_long(n).eq. 2006) then
       
   415        year_setback = 2006 -2004
       
   416     end if
       
   417     if (year_ob_f_long(n).eq. 2005) then
       
   418        year_setback = 2005 -2004
       
   419     end if
       
   420 ;##################################################################
       
   421     
       
   422     ntime = (nyear - year_setback) * nmonth
       
   423 
       
   424     data_ob   = new ((/nfield, nyear, nmonth/),float)
       
   425 
       
   426     dir_f = dir_root + station_long(n)+"/"
       
   427     fil_f = "timeseries_L4_m.nc"
       
   428     fo    = addfile (dir_f+fil_f,"r")
       
   429 
       
   430     data_ob(0,:,:) = fo->NEE_or_fMDS
       
   431     data_ob(1,:,:) = fo->Rg_f
       
   432     data_ob(2,:,:) = fo->LE_f
       
   433     data_ob(3,:,:) = fo->H_f
       
   434     data_ob(4,:,:) = fo->GPP_or_MDS
       
   435     data_ob(5,:,:) = fo->Reco_or
       
   436 
       
   437     data_ob(1,:,:) = data_ob(1,:,:) * factor_rad
       
   438 
       
   439     delete (fo)
       
   440 
       
   441     timeI = new((/ntime/),integer)
       
   442     timeF = new((/ntime/),float)
       
   443     timeI = ispan(1,ntime,1)
       
   444     timeF = year_ob_i_long(n) + (timeI-1)/12.
       
   445     timeF@long_name = "year" 
       
   446 
       
   447     plot_data = new((/2,ntime/),float)
       
   448  
       
   449 ;----------------------------
       
   450 ; for model_vs_ob
       
   451 
       
   452     plot_name = station_long(n)+"_tseries_vs_ob"
       
   453     title = station_long(n)+"("+sprintf("%5.2f",lat_ob_long(n))+","+sprintf("%5.2f",lon_ob_long(n))+")"    
       
   454     res@tiMainString = title
       
   455 
       
   456     wks = gsn_open_wks (plot_type,plot_name)
       
   457     plot=new(nfield,graphic)                         ; create graphic array   
       
   458 
       
   459     i_year_mod_i = year_ob_i_long(n) - 1990 
       
   460     i_year_mod_f = i_year_mod_i + nyear - 1 - year_setback
       
   461 
       
   462     i_year_ob_f =  nyear - year_setback - 1 
       
   463 
       
   464 ;   print (nyear)
       
   465 ;   print (i_year_ob_f)
       
   466 ;   print (i_year_mod_i)
       
   467 ;   print (i_year_mod_f)
       
   468 
       
   469     do i = 0,nfield-1                           
       
   470        plot_data(0,:) = ndtooned(data_ob (i,0:i_year_ob_f,:))
       
   471        plot_data(1,:) = ndtooned(data_mod_long(i,i_year_mod_i:i_year_mod_f,:,n))
       
   472        plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
       
   473        plot(i)=gsn_csm_xy(wks,timeF,plot_data,res)            ; create plot 
       
   474     end do
       
   475    
       
   476     gsn_panel(wks,plot,(/3,2/),pres)                    ; create panel plot
       
   477 
       
   478     system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
       
   479            "rm "+plot_name+"."+plot_type)
       
   480 
       
   481     clear (wks)  
       
   482     delete (plot)
       
   483 
       
   484     delete (data_ob)
       
   485     delete (timeI)    
       
   486     delete (timeF)
       
   487     delete (plot_data)
       
   488 
       
   489  end do
       
   490 
       
   491 ;###################################################################
       
   492 ; for the following tables,
       
   493 ; sort by latitude in decending order (N->S)
       
   494 
       
   495   isort = dim_pqsort(lat_ob_long,-1)
       
   496 
       
   497   station_sort = station_long(isort)
       
   498   year_ob_sort = year_ob_long(isort)
       
   499   lat_ob_sort  = lat_ob_long(isort)
       
   500   lon_ob_sort  = lon_ob_long(isort)
       
   501  
       
   502 ; print(isort)
       
   503 ; print(lat_ob_sort)
       
   504 
       
   505 ;*******************************************************************
       
   506 ; html table of site: observed
       
   507 ;*******************************************************************
       
   508   output_html = "tseries_vs_ob.html"
       
   509 
       
   510   header = (/"<HTML>" \
       
   511             ,"<HEAD>" \
       
   512             ,"<TITLE>CLAMP metrics</TITLE>" \
       
   513             ,"</HEAD>" \
       
   514             ,"<H1>Timeseries at Site: "+model_name+" vs Observation</H1>" \
       
   515             /) 
       
   516   footer = "</HTML>"
       
   517 
       
   518   table_header = (/ \
       
   519         "<table border=1 cellspacing=0 cellpadding=3 width=60%>" \
       
   520        ,"<tr>" \
       
   521        ,"   <th bgcolor=DDDDDD >Site Name</th>" \
       
   522        ,"   <th bgcolor=DDDDDD >Latitude</th>" \
       
   523        ,"   <th bgcolor=DDDDDD >Longitude</th>" \
       
   524        ,"   <th bgcolor=DDDDDD >Observed</th>" \ 
       
   525        ,"</tr>" \
       
   526        /)
       
   527   table_footer = "</table>"
       
   528   row_header = "<tr>"
       
   529   row_footer = "</tr>"
       
   530 
       
   531   lines = new(50000,string)
       
   532   nline = 0
       
   533 
       
   534   set_line(lines,nline,header)
       
   535   set_line(lines,nline,table_header)
       
   536 ;-----------------------------------------------
       
   537 ; row of table
       
   538   
       
   539   do n = 0,nstation_long-1
       
   540 
       
   541      set_line(lines,nline,row_header)
       
   542 
       
   543      txt0 = station_sort(n)
       
   544      txt1 = sprintf("%5.2f", lat_ob_sort(n))
       
   545      txt2 = sprintf("%5.2f", lon_ob_sort(n))
       
   546      txt3 = year_ob_sort(n)
       
   547 
       
   548      set_line(lines,nline,"<th><a href="+txt0+"_tseries_vs_ob.png>"+txt0+"</a></th>")
       
   549      set_line(lines,nline,"<th>"+txt1+"</th>")
       
   550      set_line(lines,nline,"<th>"+txt2+"</th>")
       
   551      set_line(lines,nline,"<th>"+txt3+"</th>")
       
   552 
       
   553      set_line(lines,nline,row_footer)
       
   554   end do
       
   555 ;-----------------------------------------------
       
   556   set_line(lines,nline,table_footer)
       
   557   set_line(lines,nline,footer) 
       
   558 
       
   559 ; Now write to an HTML file.
       
   560   idx = ind(.not.ismissing(lines))
       
   561   if(.not.any(ismissing(idx))) then
       
   562     asciiwrite(output_html,lines(idx))
       
   563   else
       
   564    print ("error?")
       
   565   end if
       
   566   delete (idx)
       
   567 
       
   568   delete (isort)
       
   569   delete (station_sort)
       
   570   delete (year_ob_sort)
       
   571   delete (lat_ob_sort)
       
   572   delete (lon_ob_sort)
       
   573 
       
   574 ;************************************************************
       
   575 ; compute annual cycle correlation coef and M score
       
   576 ;************************************************************
       
   577 
       
   578  score_max = 1.
       
   579 
       
   580  ccr     = new ((/nstation, nfield/),float)
       
   581  M_score = new ((/nstation, nfield/),float) 
       
   582 
       
   583  do n=0,nstation-1
       
   584  do m=0,nfield-1   
       
   585     ccr(n,m) = esccr(data_ob_ann(m,:,n),data_mod_ann(m,:,n),0)
       
   586     bias = sum(abs(data_mod_ann(m,:,n)-data_ob_ann(m,:,n))/(abs(data_mod_ann(m,:,n))+abs(data_ob_ann(m,:,n))))
       
   587     M_score(n,m) = (1. -(bias/nmonth)) * score_max
       
   588  end do
       
   589  end do
       
   590 
       
   591  M_nee = avg(M_score(:,0))
       
   592  M_rad = avg(M_score(:,1))
       
   593  M_lh  = avg(M_score(:,2))
       
   594  M_sh  = avg(M_score(:,3))
       
   595  M_gpp = avg(M_score(:,4))
       
   596  M_er  = avg(M_score(:,5))
       
   597  M_all = M_nee+ M_rad +M_lh + M_sh + M_gpp + M_er
       
   598 
       
   599  M_ameriflux_nee = sprintf("%.2f", M_nee)
       
   600  M_ameriflux_rad = sprintf("%.2f", M_rad)
       
   601  M_ameriflux_lh  = sprintf("%.2f", M_lh )
       
   602  M_ameriflux_sh  = sprintf("%.2f", M_sh )
       
   603  M_ameriflux_gpp = sprintf("%.2f", M_gpp)
       
   604  M_ameriflux_er  = sprintf("%.2f", M_er )
       
   605  M_ameriflux_all = sprintf("%.2f", M_all)
       
   606 
       
   607 ;*******************************************************************
       
   608 ; for station line plot
       
   609 ;*******************************************************************
       
   610 
       
   611 ; for x-axis in xyplot
       
   612   mon = ispan(1,12,1)
       
   613   mon@long_name = "month"
       
   614 
       
   615 ;-------------------------------------------------------------------
       
   616 
       
   617   plot_data   = new((/2,nmonth/),float)
       
   618   plot_data!0 = "case"
       
   619   plot_data!1 = "month"
       
   620 
       
   621   do n = 0,nstation-1
       
   622 ;----------------------------
       
   623 ; for observed
       
   624 
       
   625     plot_name = station(n)+"_ob"    
       
   626     title = station(n)+"("+sprintf("%5.2f",lat_ob(n))+","+sprintf("%5.2f",lon_ob(n))+")"
       
   627     res@tiMainString = title
       
   628 
       
   629     wks = gsn_open_wks (plot_type,plot_name)
       
   630     plot=new(nfield,graphic)                        ; create graphic array   
       
   631 
       
   632     do i = 0,nfield-1                           
       
   633        plot_data(0,:) = (/data_ob_ann(i,:,n)/)
       
   634        plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
       
   635        plot(i)=gsn_csm_xy(wks,mon,plot_data(0,:),res)    ; create plot 
       
   636     end do
       
   637 
       
   638     gsn_panel(wks,plot,(/3,2/),pres)                 ; create panel plot
       
   639 
       
   640     system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
       
   641            "rm "+plot_name+"."+plot_type)
       
   642 
       
   643     clear (wks)  
       
   644     delete (plot)
       
   645 ;----------------------------
       
   646 ; for model_vs_ob
       
   647 
       
   648     plot_name = station(n)+"_model_vs_ob"
       
   649     title = station(n)+"("+sprintf("%5.2f",lat_ob(n))+","+sprintf("%5.2f",lon_ob(n))+")"    
       
   650     res@tiMainString = title
       
   651 
       
   652     wks = gsn_open_wks (plot_type,plot_name)
       
   653     plot=new(nfield,graphic)                         ; create graphic array   
       
   654 
       
   655     do i = 0,nfield-1                           
       
   656        plot_data(0,:) = (/data_ob_ann(i,:,n)/)
       
   657        plot_data(1,:) = (/data_mod_ann(i,:,n)/)
       
   658        plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
       
   659        plot(i)=gsn_csm_xy(wks,mon,plot_data,res)     ; create plot 
       
   660     end do
       
   661    
       
   662     gsn_panel(wks,plot,(/3,2/),pres)                 ; create panel plot
       
   663 
       
   664     system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
       
   665            "rm "+plot_name+"."+plot_type)
       
   666 
       
   667     clear (wks)  
       
   668     delete (plot)
       
   669  end do
       
   670 
       
   671 ;###################################################################
       
   672 ; for the following tables,
       
   673 ; sort by latitude in decending order (N->S)
       
   674 ; sort by lat in decending order (N->S)
       
   675 
       
   676   isort = dim_pqsort(lat_ob,-1)
       
   677 
       
   678   station_sort = station(isort)
       
   679   year_ob_sort = year_ob(isort)
       
   680   lat_ob_sort  = lat_ob(isort)
       
   681   lon_ob_sort  = lon_ob(isort)
       
   682   M_score_sort = M_score(isort,:)
       
   683  
       
   684 ; print(isort)
       
   685 ; print(lat_ob_sort)
       
   686 ;###################################################################
       
   687 ;*******************************************************************
       
   688 ; html table of site: observed
       
   689 ;*******************************************************************
       
   690   output_html = "line_ob.html"
       
   691 
       
   692   header = (/"<HTML>" \
       
   693             ,"<HEAD>" \
       
   694             ,"<TITLE>CLAMP metrics</TITLE>" \
       
   695             ,"</HEAD>" \
       
   696             ,"<H1>Energy at Site: Observation</H1>" \
       
   697             /) 
       
   698   footer = "</HTML>"
       
   699 
       
   700   table_header = (/ \
       
   701         "<table border=1 cellspacing=0 cellpadding=3 width=60%>" \
       
   702        ,"<tr>" \
       
   703        ,"   <th bgcolor=DDDDDD >Site Name</th>" \
       
   704        ,"   <th bgcolor=DDDDDD >Latitude</th>" \
       
   705        ,"   <th bgcolor=DDDDDD >Longitude</th>" \
       
   706        ,"   <th bgcolor=DDDDDD >Observed</th>" \ 
       
   707        ,"</tr>" \
       
   708        /)
       
   709   table_footer = "</table>"
       
   710   row_header = "<tr>"
       
   711   row_footer = "</tr>"
       
   712 
       
   713   lines = new(50000,string)
       
   714   nline = 0
       
   715 
       
   716   set_line(lines,nline,header)
       
   717   set_line(lines,nline,table_header)
       
   718 ;-----------------------------------------------
       
   719 ; row of table
       
   720   
       
   721   do n = 0,nstation-1
       
   722      set_line(lines,nline,row_header)
       
   723 
       
   724      txt0 = station_sort(n)
       
   725      txt1 = sprintf("%5.2f", lat_ob_sort(n))
       
   726      txt2 = sprintf("%5.2f", lon_ob_sort(n))
       
   727      txt3 = year_ob_sort(n)
       
   728 
       
   729      set_line(lines,nline,"<th><a href="+txt0+"_ob.png>"+txt0+"</a></th>")
       
   730      set_line(lines,nline,"<th>"+txt1+"</th>")
       
   731      set_line(lines,nline,"<th>"+txt2+"</th>")
       
   732      set_line(lines,nline,"<th>"+txt3+"</th>")
       
   733 
       
   734      set_line(lines,nline,row_footer)
       
   735   end do
       
   736 ;-----------------------------------------------
       
   737   set_line(lines,nline,table_footer)
       
   738   set_line(lines,nline,footer) 
       
   739 
       
   740 ; Now write to an HTML file.
       
   741   idx = ind(.not.ismissing(lines))
       
   742   if(.not.any(ismissing(idx))) then
       
   743     asciiwrite(output_html,lines(idx))
       
   744   else
       
   745    print ("error?")
       
   746   end if
       
   747   delete (idx)
       
   748 
       
   749 ;*******************************************************************
       
   750 ; score and line table : model vs observed
       
   751 ;*******************************************************************
       
   752   output_html = "score+line_vs_ob.html"
       
   753 
       
   754   header = (/"<HTML>" \
       
   755             ,"<HEAD>" \
       
   756             ,"<TITLE>CLAMP metrics</TITLE>" \
       
   757             ,"</HEAD>" \
       
   758             ,"<H1>Energy at Site: Model "+model_name+"</H1>" \
       
   759             /) 
       
   760   footer = "</HTML>"
       
   761 
       
   762   delete (table_header)
       
   763   table_header = (/ \
       
   764         "<table border=1 cellspacing=0 cellpadding=3 width=100%>" \
       
   765        ,"<tr>" \
       
   766        ,"   <th bgcolor=DDDDDD >Site Name</th>" \
       
   767        ,"   <th bgcolor=DDDDDD >Latitude</th>" \
       
   768        ,"   <th bgcolor=DDDDDD >Longitude</th>" \
       
   769        ,"   <th bgcolor=DDDDDD >Observed</th>" \
       
   770        ,"   <th bgcolor=DDDDDD >NEE Flux</th>" \
       
   771        ,"   <th bgcolor=DDDDDD >Shortwave <br> Incoming</th>" \
       
   772        ,"   <th bgcolor=DDDDDD >Latent Heat</th>" \
       
   773        ,"   <th bgcolor=DDDDDD >Sensible Heat</th>" \
       
   774        ,"   <th bgcolor=DDDDDD >GPP Flux</th>" \
       
   775        ,"   <th bgcolor=DDDDDD >Respiration</th>" \
       
   776        ,"   <th bgcolor=DDDDDD >Average</th>" \
       
   777        ,"</tr>" \
       
   778        /)
       
   779   table_footer = "</table>"
       
   780   row_header = "<tr>"
       
   781   row_footer = "</tr>"
       
   782 
       
   783   lines = new(50000,string)
       
   784   nline = 0
       
   785 
       
   786   set_line(lines,nline,header)
       
   787   set_line(lines,nline,table_header)
       
   788 ;-----------------------------------------------
       
   789 ; row of table
       
   790   
       
   791   do n = 0,nstation-1
       
   792      set_line(lines,nline,row_header)
       
   793 
       
   794      txt0  = station_sort(n)
       
   795      txt1  = sprintf("%5.2f", lat_ob_sort(n))
       
   796      txt2  = sprintf("%5.2f", lon_ob_sort(n))
       
   797      txt3  = year_ob_sort(n)
       
   798      txt4  = sprintf("%5.2f", M_score_sort(n,0))
       
   799      txt5  = sprintf("%5.2f", M_score_sort(n,1))
       
   800      txt6  = sprintf("%5.2f", M_score_sort(n,2))
       
   801      txt7  = sprintf("%5.2f", M_score_sort(n,3))
       
   802      txt8  = sprintf("%5.2f", M_score_sort(n,4))
       
   803      txt9  = sprintf("%5.2f", M_score_sort(n,5))
       
   804      txt10 = sprintf("%5.2f", avg(M_score_sort(n,:)))
       
   805 
       
   806      set_line(lines,nline,"<th><a href="+txt0+"_model_vs_ob.png>"+txt0+"</a></th>")
       
   807      set_line(lines,nline,"<th>"+txt1+"</th>")
       
   808      set_line(lines,nline,"<th>"+txt2+"</th>")
       
   809      set_line(lines,nline,"<th>"+txt3+"</th>")
       
   810      set_line(lines,nline,"<th>"+txt4+"</th>")
       
   811      set_line(lines,nline,"<th>"+txt5+"</th>")
       
   812      set_line(lines,nline,"<th>"+txt6+"</th>")
       
   813      set_line(lines,nline,"<th>"+txt7+"</th>")
       
   814      set_line(lines,nline,"<th>"+txt8+"</th>")
       
   815      set_line(lines,nline,"<th>"+txt9+"</th>")
       
   816      set_line(lines,nline,"<th>"+txt10+"</th>")
       
   817 
       
   818      set_line(lines,nline,row_footer)
       
   819   end do
       
   820 
       
   821 ; last row, summary
       
   822   set_line(lines,nline,row_header)
       
   823 
       
   824   txt0  = "All_"+sprintf("%.0f", nstation)
       
   825   txt1  = "-"
       
   826   txt2  = "-"
       
   827   txt3  = "-"
       
   828   txt4  = M_ameriflux_nee
       
   829   txt5  = M_ameriflux_rad
       
   830   txt6  = M_ameriflux_lh
       
   831   txt7  = M_ameriflux_sh
       
   832   txt8  = M_ameriflux_gpp
       
   833   txt9  = M_ameriflux_er
       
   834   txt10 = M_ameriflux_all
       
   835 
       
   836   set_line(lines,nline,"<th>"+txt0+"</th>")
       
   837   set_line(lines,nline,"<th>"+txt1+"</th>")
       
   838   set_line(lines,nline,"<th>"+txt2+"</th>")
       
   839   set_line(lines,nline,"<th>"+txt3+"</th>")
       
   840   set_line(lines,nline,"<th>"+txt4+"</th>")
       
   841   set_line(lines,nline,"<th>"+txt5+"</th>")
       
   842   set_line(lines,nline,"<th>"+txt6+"</th>")
       
   843   set_line(lines,nline,"<th>"+txt7+"</th>")
       
   844   set_line(lines,nline,"<th>"+txt8+"</th>")
       
   845   set_line(lines,nline,"<th>"+txt9+"</th>")
       
   846   set_line(lines,nline,"<th>"+txt10+"</th>")
       
   847 
       
   848   set_line(lines,nline,row_footer)
       
   849 ;-----------------------------------------------
       
   850   set_line(lines,nline,table_footer)
       
   851   set_line(lines,nline,footer) 
       
   852 
       
   853 ; Now write to an HTML file.
       
   854   idx = ind(.not.ismissing(lines))
       
   855   if(.not.any(ismissing(idx))) then
       
   856     asciiwrite(output_html,lines(idx))
       
   857   else
       
   858    print ("error?")
       
   859   end if
       
   860   delete (idx)
       
   861 
       
   862 ;**************************************************************************************
       
   863 ; update score
       
   864 ;**************************************************************************************
       
   865  
       
   866   if (isvar("compare")) then
       
   867      system("sed 1,/M_ameriflux_nee/s//"+M_ameriflux_nee+"/ "+html_name2+" > "+html_new2+";"+ \
       
   868             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   869             "sed 1,/M_ameriflux_rad/s//"+M_ameriflux_rad+"/ "+html_name2+" > "+html_new2+";"+ \
       
   870             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   871             "sed 1,/M_ameriflux_lh/s//"+M_ameriflux_lh+"/ "+html_name2+" > "+html_new2+";"+ \
       
   872             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   873             "sed 1,/M_ameriflux_sh/s//"+M_ameriflux_sh+"/ "+html_name2+" > "+html_new2+";"+ \
       
   874             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   875             "sed 1,/M_ameriflux_gpp/s//"+M_ameriflux_gpp+"/ "+html_name2+" > "+html_new2+";"+ \
       
   876             "mv -f "+html_new2+" "+html_name2+";"+ \
       
   877             "sed 1,/M_ameriflux_er/s//"+M_ameriflux_er+"/ "+html_name2+" > "+html_new2+";"+ \
       
   878             "mv -f "+html_new2+" "+html_name2)
       
   879   end if
       
   880 
       
   881   system("sed s#M_ameriflux_nee#"+M_ameriflux_nee+"# "+html_name+" > "+html_new+";"+ \
       
   882          "mv -f "+html_new+" "+html_name+";"+ \
       
   883          "sed s#M_ameriflux_rad#"+M_ameriflux_rad+"# "+html_name+" > "+html_new+";"+ \
       
   884          "mv -f "+html_new+" "+html_name+";"+ \
       
   885          "sed s#M_ameriflux_lh#"+M_ameriflux_lh+"# "+html_name+" > "+html_new+";"+ \
       
   886          "mv -f "+html_new+" "+html_name+";"+ \
       
   887          "sed s#M_ameriflux_sh#"+M_ameriflux_sh+"# "+html_name+" > "+html_new+";"+ \
       
   888          "mv -f "+html_new+" "+html_name+";"+ \
       
   889          "sed s#M_ameriflux_gpp#"+M_ameriflux_gpp+"# "+html_name+" > "+html_new+";"+ \
       
   890          "mv -f "+html_new+" "+html_name+";"+ \
       
   891          "sed s#M_ameriflux_er#"+M_ameriflux_er+"# "+html_name+" > "+html_new+";"+ \
       
   892          "mv -f "+html_new+" "+html_name) 
       
   893 
       
   894 ;***************************************************************************
       
   895 ; add total score and write to file
       
   896 ;***************************************************************************
       
   897   M_total = M_ameriflux_all
       
   898 
       
   899   asciiwrite("M_save.ameriflux", M_total)
       
   900 
       
   901 ;***************************************************************************
       
   902 ; output plot and html
       
   903 ;***************************************************************************
       
   904   output_dir = model_name+"/ameriflux"
       
   905 
       
   906   system("mv *.png *.html " + output_dir) 
       
   907 ;***************************************************************************
       
   908 
       
   909 end
       
   910