all/run_2-model_39cn_40cn.csh
changeset 1 4be95183fbcd
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     1 #!/bin/csh -f
       
     2 #-------------------------------------------------------------------
       
     3 # note: user modifies ONLY the "user modification" section 
       
     4 #
       
     5 #       COMPARE: model1 vs model2
       
     6 #       MODELn : model name
       
     7 #       DIR_M  : directory of model data
       
     8 #       DIR_O  : directory of observed data
       
     9 #       DIR_S  : directory of model surface data
       
    10 #       DIR_SCRIPTS  : directory of run scripts
       
    11 #       FILE1  : time_mean  climatology from CLM diagnostic package
       
    12 #       FILE2  : 12-monthly climatology from CLM diagnostic package
       
    13 #       FILE3  : 12-monthly climatology from ATM diagnostic package
       
    14 #                leave it blank, if no ATM file:
       
    15 #                set FILE3 =
       
    16 #       FILE7 : timeseries file generated from .... 
       
    17 #       FILE8 : timeseries file generated from .... 
       
    18 #       GRID   : T31, T42, or 1.9
       
    19 #       BGC    : cn or casa 
       
    20 #       ENERGY : new or old (fields in model data)
       
    21 #-------------------------------------------------------------------
       
    22 
       
    23 #*******************************************************
       
    24 # user modification-(1)
       
    25 
       
    26 # directory name of model comparison
       
    27 #et COMPARE = b30.061n_vs_b30.061m
       
    28 set COMPARE = i01.39cn_vs_i01.40cn
       
    29 
       
    30 #*******************************************************
       
    31 # user modification-(2)
       
    32 
       
    33 # model1 
       
    34 set MODEL1 = i01.39cn
       
    35 set DIR_M  = /lustre/wolf-ddn/scratch/hof/cases1/i01.39cn_out/
       
    36 set FILE1  = i01.39cn_out_ANN_climo.nc
       
    37 set FILE2  = i01.39cn_out_MONS_climo.nc
       
    38 set FILE3  = 
       
    39 set FILE4  = $FILE1
       
    40 set FILE5  = $FILE1
       
    41 set FILE6  = $FILE1
       
    42 set FILE7  = i01.39cn_Fire_C_2101-2125_monthly.nc
       
    43 set FILE8  = i01.39cn_ameriflux_2101-2125_monthly.nc
       
    44 set FILE9  = $FILE1
       
    45 set FILE10 = $FILE2
       
    46 set GRID   = 1.9
       
    47 set BGC    = cn
       
    48 set ENERGY = old
       
    49 
       
    50 # in the "CLAMP metric processing" section:
       
    51 #  only 00.initial.ncl and 99.final.ncl are required,
       
    52 #  user can comment out any one or more of the other ncl scripts,
       
    53 #  e.g. 
       
    54 #  #ncl $INPUT_TEXT $DIR_SCRIPTS/10.fire.ncl
       
    55 
       
    56 # model surface data
       
    57 set DIR_S  = /lustre/wolf-ddn/scratch/hof/clamp_data/surface_model/
       
    58 
       
    59 # observed data
       
    60 set DIR_O  = /lustre/wolf-ddn/scratch/hof/clamp_data/observed/
       
    61 
       
    62 # directory for scripts, templates and ncl files
       
    63 set DIR_SCRIPTS = /lustre/wolf-ddn/scratch/hof/clamp/all/
       
    64 
       
    65 #********************************************************
       
    66 
       
    67 # create model1 and model1_vs_model2 directory by copying templates
       
    68 if ($FILE3 != "") then
       
    69    set TEMPLATE1 = template_1-model
       
    70    set TEMPLATE2 = template_2-model
       
    71 else
       
    72    set TEMPLATE1 = template_1-model_noCO2
       
    73    set TEMPLATE2 = template_2-model_noCO2
       
    74 endif
       
    75 #cp -r $DIR_SCRIPTS/$TEMPLATE1 $MODEL1
       
    76 #cp -r $DIR_SCRIPTS/$TEMPLATE2 $COMPARE
       
    77 rm -rf $MODEL1
       
    78 rm -rf $COMPARE
       
    79 tar xvpf $DIR_SCRIPTS/$TEMPLATE1.tar
       
    80 mv $TEMPLATE1 $MODEL1
       
    81 tar xvpf $DIR_SCRIPTS/$TEMPLATE2.tar
       
    82 mv $TEMPLATE2 $COMPARE
       
    83 
       
    84 # add quote, to be usesd in INPUT_TEXT
       
    85 set MODELQ = \"$MODEL1\"
       
    86 set DIRMQ  = \"$DIR_M\"
       
    87 set F1  = \"$FILE1\"
       
    88 set F2  = \"$FILE2\"
       
    89 set F3  = \"$FILE3\"
       
    90 set F4  = \"$FILE4\"
       
    91 set F5  = \"$FILE5\"
       
    92 set F6  = \"$FILE6\"
       
    93 set F7  = \"$FILE7\"
       
    94 set F8  = \"$FILE8\"
       
    95 set F9  = \"$FILE9\"
       
    96 set F10 = \"$FILE10\"
       
    97 set GRIDQ   = \"$GRID\"
       
    98 set BGCQ    = \"$BGC\"
       
    99 set ENERGYQ = \"$ENERGY\"
       
   100 set DIRSQ   = \"$DIR_S\"
       
   101 set DIROQ   = \"$DIR_O\"
       
   102 set DIRCQ   = \"$DIR_SCRIPTS\"
       
   103 
       
   104 set COMPAREQ = \"$COMPARE\"
       
   105 set MODELN   = \"model1\"
       
   106 
       
   107 set INPUT_TEXT = "model_name=$MODELQ model_grid=$GRIDQ dirm=$DIRMQ film1=$F1 film2=$F2 film3=$F3 film4=$F4 film5=$F5 film6=$F6 film7=$F7 film8=$F8 film9=$F9 film10=$F10 BGC=$BGCQ ENERGY=$ENERGYQ dirs=$DIRSQ diro=$DIROQ dirscript=$DIRCQ modeln=$MODELN compare=$COMPAREQ"
       
   108  
       
   109 echo "`date` - Running diagnostics for model ${MODELQ}"
       
   110 # CLAMP metric processing of model1
       
   111 echo "`date` - Running 00.initial.ncl"
       
   112 ncl $INPUT_TEXT $DIR_SCRIPTS/00.initial.ncl
       
   113 echo "`date` - Running 01.npp.ncl"
       
   114 ncl $INPUT_TEXT $DIR_SCRIPTS/01.npp.ncl
       
   115 echo "`date` - Running 01.lai.ncl"
       
   116 ncl $INPUT_TEXT $DIR_SCRIPTS/02.lai.ncl
       
   117 
       
   118 if ($FILE3 != "") then
       
   119 echo "`date` - Running 03.co2.ncl"
       
   120 ncl $INPUT_TEXT $DIR_SCRIPTS/03.co2.ncl
       
   121 endif
       
   122 
       
   123 echo "`date` - Running 04.biomass.ncl"
       
   124 ncl $INPUT_TEXT $DIR_SCRIPTS/04.biomass.ncl
       
   125 echo "`date` - Running 06.fluxnet.ncl"
       
   126 ncl $INPUT_TEXT $DIR_SCRIPTS/06.fluxnet.ncl
       
   127 echo "`date` - Running 07.beta.ncl"
       
   128 ncl $INPUT_TEXT $DIR_SCRIPTS/07.beta.ncl
       
   129 echo "`date` - Running 08.turnover.ncl"
       
   130 ncl $INPUT_TEXT $DIR_SCRIPTS/08.turnover.ncl
       
   131 
       
   132 if ($BGC != "casa") then
       
   133 echo "`date` - Running 09.carbon_sink.ncl"
       
   134 ncl $INPUT_TEXT $DIR_SCRIPTS/09.carbon_sink.ncl
       
   135 else
       
   136 echo "`date` - Running 09x.carbon_sink.ncl"
       
   137 ncl $INPUT_TEXT $DIR_SCRIPTS/09x.carbon_sink.ncl
       
   138 endif
       
   139 
       
   140 if ($BGC != "casa") then
       
   141 echo "`date` - Running 10.fire.ncl"
       
   142 ncl $INPUT_TEXT $DIR_SCRIPTS/10.fire.ncl
       
   143 endif
       
   144 
       
   145 echo "`date` - Running 11.ameriflux.ncl"
       
   146 ncl $INPUT_TEXT $DIR_SCRIPTS/11.ameriflux.ncl
       
   147 echo "`date` - Running 99.final.ncl"
       
   148 ncl $INPUT_TEXT $DIR_SCRIPTS/99.final.ncl
       
   149 
       
   150 #*******************************************************
       
   151 # user modification-(3)
       
   152 
       
   153 # model2
       
   154 set MODEL2 = i01.40cn
       
   155 set DIR_M  = /lustre/wolf-ddn/scratch/hof/cases1/i01.40cn_out/
       
   156 set FILE1  = i01.40cn_out_ANN_climo.nc
       
   157 set FILE2  = i01.40cn_out_MONS_climo.nc
       
   158 set FILE3  = 
       
   159 set FILE4  = $FILE1
       
   160 set FILE5  = $FILE1
       
   161 set FILE6  = $FILE1
       
   162 set FILE7  = i01.40cn_Fire_C_2076-2100_monthly.nc
       
   163 set FILE8  = i01.40cn_ameriflux_2076-2100_monthly.nc
       
   164 set FILE9  = $FILE1
       
   165 set FILE10 = $FILE2
       
   166 set GRID   = 1.9
       
   167 set BGC    = cn
       
   168 set ENERGY = old
       
   169 #*******************************************************
       
   170 # create model2 directory by copying templates
       
   171 if ($FILE3 != "") then
       
   172    set TEMPLATE1 = template_1-model
       
   173 else
       
   174    set TEMPLATE1 = template_1-model_noCO2
       
   175 endif
       
   176 #cp -r $DIR_SCRIPTS/$TEMPLATE1 $MODEL2
       
   177 rm -rf $MODEL2
       
   178 tar xvpf $DIR_SCRIPTS/$TEMPLATE1.tar
       
   179 mv $TEMPLATE1 $MODEL2
       
   180 
       
   181 # add quote, to be usesd in INPUT_TEXT
       
   182 set MODELQ  = \"$MODEL2\"
       
   183 set DIRMQ   = \"$DIR_M\"
       
   184 set F1  = \"$FILE1\"
       
   185 set F2  = \"$FILE2\"
       
   186 set F3  = \"$FILE3\"
       
   187 set F4  = \"$FILE4\"
       
   188 set F5  = \"$FILE5\"
       
   189 set F6  = \"$FILE6\"
       
   190 set F7  = \"$FILE7\"
       
   191 set F8  = \"$FILE8\"
       
   192 set F9  = \"$FILE9\"
       
   193 set F10 = \"$FILE10\"
       
   194 set GRIDQ   = \"$GRID\"
       
   195 set BGCQ    = \"$BGC\"
       
   196 set ENERGYQ = \"$ENERGY\"
       
   197 
       
   198 set COMPAREQ = \"$COMPARE\"
       
   199 set MODELN   = \"model2\"
       
   200 
       
   201 set INPUT_TEXT = "model_name=$MODELQ model_grid=$GRIDQ dirm=$DIRMQ film1=$F1 film2=$F2 film3=$F3 film4=$F4 film5=$F5 film6=$F6 film7=$F7 film8=$F8 film9=$F9 film10=$F10 BGC=$BGCQ ENERGY=$ENERGYQ dirs=$DIRSQ diro=$DIROQ dirscript=$DIRCQ modeln=$MODELN compare=$COMPAREQ"
       
   202  
       
   203 echo "`date` - Running diagnostics for model ${MODELQ}"
       
   204 # CLAMP metric processing of model2
       
   205 echo "`date` - Running 00.inital.ncl"
       
   206 ncl $INPUT_TEXT $DIR_SCRIPTS/00.initial.ncl
       
   207 echo "`date` - Running 01.npp.ncl"
       
   208 ncl $INPUT_TEXT $DIR_SCRIPTS/01.npp.ncl
       
   209 echo "`date` - Running 02.lai.ncl"
       
   210 ncl $INPUT_TEXT $DIR_SCRIPTS/02.lai.ncl
       
   211 
       
   212 if ($FILE3 != "") then
       
   213 echo "`date` - Running 03.co2.ncl"
       
   214 ncl $INPUT_TEXT $DIR_SCRIPTS/03.co2.ncl
       
   215 endif
       
   216 
       
   217 echo "`date` - Running 04.biomass.ncl"
       
   218 ncl $INPUT_TEXT $DIR_SCRIPTS/04.biomass.ncl
       
   219 echo "`date` - Running 06.fluxnet.ncl"
       
   220 ncl $INPUT_TEXT $DIR_SCRIPTS/06.fluxnet.ncl
       
   221 echo "`date` - Running 07.beta.ncl"
       
   222 ncl $INPUT_TEXT $DIR_SCRIPTS/07.beta.ncl
       
   223 echo "`date` - Running 08.turnover.ncl"
       
   224 ncl $INPUT_TEXT $DIR_SCRIPTS/08.turnover.ncl
       
   225 
       
   226 if ($BGC != "casa") then
       
   227 echo "`date` - Running 09.carbon_sink.ncl"
       
   228 ncl $INPUT_TEXT $DIR_SCRIPTS/09.carbon_sink.ncl
       
   229 else
       
   230 echo "`date` - Running 09x.carbon_sink.ncl"
       
   231 ncl $INPUT_TEXT $DIR_SCRIPTS/09x.carbon_sink.ncl
       
   232 endif
       
   233 
       
   234 if ($BGC != "casa") then
       
   235 echo "`date` - Running 10.fire.ncl"
       
   236 ncl $INPUT_TEXT $DIR_SCRIPTS/10.fire.ncl
       
   237 endif
       
   238 
       
   239 echo "`date` - Running 11.ameriflux.ncl"
       
   240 ncl $INPUT_TEXT $DIR_SCRIPTS/11.ameriflux.ncl
       
   241 echo "`date` - Running 99.final.ncl"
       
   242 ncl $INPUT_TEXT $DIR_SCRIPTS/99.final.ncl
       
   243 
       
   244 # create a tar file from the final output
       
   245 echo "`date` - tarring up final output into all.tar"
       
   246 tar cf - $MODEL1 $MODEL2 $COMPARE > all.tar
       
   247