|
1 ;******************************************************** |
|
2 ; required command line input parameters: |
|
3 ; ncl 'model_name="10cn" model_grid="T42" dirm="/.../ film="..."' 01.npp.ncl |
|
4 ; |
|
5 ; histogram normalized by rain and compute correleration |
|
6 ;************************************************************** |
|
7 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl" |
|
8 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl" |
|
9 load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl" |
|
10 ;************************************************************** |
|
11 procedure set_line(lines:string,nline:integer,newlines:string) |
|
12 begin |
|
13 ; add line to ascci/html file |
|
14 |
|
15 nnewlines = dimsizes(newlines) |
|
16 if(nline+nnewlines-1.ge.dimsizes(lines)) |
|
17 print("set_line: bad index, not setting anything.") |
|
18 return |
|
19 end if |
|
20 lines(nline:nline+nnewlines-1) = newlines |
|
21 ; print ("lines = " + lines(nline:nline+nnewlines-1)) |
|
22 nline = nline + nnewlines |
|
23 return |
|
24 end |
|
25 ;************************************************************** |
|
26 ; Main code. |
|
27 begin |
|
28 |
|
29 plot_type = "ps" |
|
30 plot_type_new = "png" |
|
31 |
|
32 ;components |
|
33 |
|
34 component = (/"Leaf","Wood","Fine_Root","Litter","Coarse_Woody_Debris","Soil"/) |
|
35 n_comp = dimsizes(component) |
|
36 |
|
37 field_pool = (/"LEAFC","WOODC","FROOTC","LITTERC","CWDC","SOILC"/) |
|
38 field_flux = (/"LEAFC_ALLOC","WOODC_ALLOC","FROOTC_ALLOC","LITTERC_LOSS","CWDC_LOSS","SOILC_HR"/) |
|
39 |
|
40 ;************************************************ |
|
41 ; read data: model |
|
42 ;************************************************ |
|
43 |
|
44 model_grid = "T42" |
|
45 |
|
46 ;model_name = "i01.06cn" |
|
47 model_name = "i01.06casa" |
|
48 |
|
49 dirm = "/fis/cgd/cseg/people/jeff/clamp_data/model/" |
|
50 film = model_name + "_1980-2004_ANN_climo.nc" |
|
51 |
|
52 fm = addfile (dirm+film,"r") |
|
53 |
|
54 do k = 0,n_comp-1 |
|
55 |
|
56 pool = fm->$field_pool(k)$ |
|
57 flux = fm->$field_flux(k)$ |
|
58 |
|
59 ;Units for these variables are: |
|
60 ;pool: g C/m^2 |
|
61 ;flux: g C/m^2/s |
|
62 |
|
63 nsec_per_year = 60*60*24*365 |
|
64 |
|
65 flux = flux * nsec_per_year |
|
66 |
|
67 ; casa only |
|
68 ; all the plant pools (leaf, wood, and fine root) and |
|
69 ; coarse woody debris (cwd) and litter pools for |
|
70 ; CASA need to be divided by 1200. The soil flux |
|
71 ; and turnover time are fine and do not need to be adjusted. |
|
72 |
|
73 if (k .ne. n_comp-1) then |
|
74 flux = flux/1200. |
|
75 end if |
|
76 ;************************************************ |
|
77 ; read data: observed-biome |
|
78 ;************************************************ |
|
79 |
|
80 ob_name = "MODIS MOD 15A2 2000-2005" |
|
81 |
|
82 diro = "/fis/cgd/cseg/people/jeff/clamp_data/lai/ob/" |
|
83 filo = "land_class_"+model_grid+".nc" |
|
84 |
|
85 fo = addfile(diro+filo,"r") |
|
86 |
|
87 classob = tofloat(fo->LAND_CLASS) |
|
88 |
|
89 nclass = 20 |
|
90 |
|
91 ;******************************************************************* |
|
92 ; Calculate "nice" bins for binning the data in equally spaced ranges |
|
93 ;******************************************************************** |
|
94 |
|
95 nclassn = nclass + 1 |
|
96 range = fspan(0,nclassn-1,nclassn) |
|
97 ; print (range) |
|
98 |
|
99 ; Use this range information to grab all the values in a |
|
100 ; particular range, and then take an average. |
|
101 |
|
102 nr = dimsizes(range) |
|
103 nx = nr-1 |
|
104 xvalues = new((/2,nx/),float) |
|
105 xvalues(0,:) = range(0:nr-2) + (range(1:)-range(0:nr-2))/2. |
|
106 dx = xvalues(0,1) - xvalues(0,0) ; range width |
|
107 dx4 = dx/4 ; 1/4 of the range |
|
108 xvalues(1,:) = xvalues(0,:) - dx/5. |
|
109 |
|
110 ; get data |
|
111 |
|
112 base_1D = ndtooned(classob) |
|
113 data1_1D = ndtooned(pool) |
|
114 data2_1D = ndtooned(flux) |
|
115 |
|
116 ; output |
|
117 |
|
118 yvalues = new((/2,nx/),float) |
|
119 count = new((/2,nx/),float) |
|
120 |
|
121 do nd=0,1 |
|
122 |
|
123 ; See if we are doing data1 (nd=0) or data2 (nd=1). |
|
124 |
|
125 base = base_1D |
|
126 |
|
127 if(nd.eq.0) then |
|
128 data = data1_1D |
|
129 else |
|
130 data = data2_1D |
|
131 end if |
|
132 |
|
133 ; Loop through each range, using base. |
|
134 |
|
135 do i=0,nr-2 |
|
136 if (i.ne.(nr-2)) then |
|
137 ; print("") |
|
138 ; print("In range ["+range(i)+","+range(i+1)+")") |
|
139 idx = ind((base.ge.range(i)).and.(base.lt.range(i+1))) |
|
140 else |
|
141 ; print("") |
|
142 ; print("In range ["+range(i)+",)") |
|
143 idx = ind(base.ge.range(i)) |
|
144 end if |
|
145 |
|
146 ; Calculate average |
|
147 |
|
148 if(.not.any(ismissing(idx))) then |
|
149 yvalues(nd,i) = avg(data(idx)) |
|
150 count(nd,i) = dimsizes(idx) |
|
151 else |
|
152 yvalues(nd,i) = yvalues@_FillValue |
|
153 count(nd,i) = 0 |
|
154 end if |
|
155 |
|
156 ;############################################################# |
|
157 ; set the following 4 classes to _FillValue: |
|
158 ; Water Bodies(0), Urban and Build-Up(13), |
|
159 ; Permenant Snow and Ice(15), Unclassified(17) |
|
160 |
|
161 if (i.eq.0 .or. i.eq.13 .or. i.eq.15 .or. i.eq.17) then |
|
162 yvalues(nd,i) = yvalues@_FillValue |
|
163 count(nd,i) = 0 |
|
164 end if |
|
165 ;############################################################# |
|
166 |
|
167 ; print(nd + ": " + count + " points, avg = " + yvalues(nd,i)) |
|
168 |
|
169 ; Clean up for next time in loop. |
|
170 |
|
171 delete(idx) |
|
172 end do |
|
173 |
|
174 delete(data) |
|
175 end do |
|
176 |
|
177 ;============================ |
|
178 ;compute turnover time |
|
179 ;============================ |
|
180 |
|
181 u = yvalues(0,:) |
|
182 v = yvalues(1,:) |
|
183 u_count = count(0,:) |
|
184 v_count = count(1,:) |
|
185 |
|
186 good = ind(.not.ismissing(u) .and. .not.ismissing(v)) |
|
187 |
|
188 uu = u(good) |
|
189 vv = v(good) |
|
190 uu_count = u_count(good) |
|
191 vv_count = v_count(good) |
|
192 |
|
193 n_biome = dimsizes(uu) |
|
194 t_biome = new((/n_biome/),float) |
|
195 |
|
196 t_biome = uu/vv |
|
197 |
|
198 ;t_biome_avg = avg(t_biome) |
|
199 t_biome_avg = sum(uu*uu_count)/sum(vv*vv_count) |
|
200 |
|
201 ;print (t_biome) |
|
202 ;print (t_biome_avg) |
|
203 |
|
204 ;=========================== |
|
205 ; for html table - biome |
|
206 ;=========================== |
|
207 |
|
208 output_html = "table_"+component(k)+".html" |
|
209 |
|
210 ; column (not including header column) |
|
211 |
|
212 col_head = (/component(k)+" Flux",component(k)+" Pool",component(k)+" Turnover Time"/) |
|
213 |
|
214 ncol = dimsizes(col_head) |
|
215 |
|
216 ; row (not including header row) |
|
217 ; 4 classes removed: Water Bodies, Urban and Build-Up, |
|
218 ; Unclassified, Permanent Snow and Ice |
|
219 |
|
220 row_head = (/"Evergreen Needleleaf Forests" \ |
|
221 ,"Evergreen Broadleaf Forests" \ |
|
222 ,"Deciduous Needleleaf Forest" \ |
|
223 ,"Deciduous Broadleaf Forests" \ |
|
224 ,"Mixed Forests" \ |
|
225 ,"Closed Bushlands" \ |
|
226 ,"Open Bushlands" \ |
|
227 ,"Woody Savannas (S. Hem.)" \ |
|
228 ,"Savannas (S. Hem.)" \ |
|
229 ,"Grasslands" \ |
|
230 ,"Permanent Wetlands" \ |
|
231 ,"Croplands" \ |
|
232 ,"Cropland/Natural Vegetation Mosaic" \ |
|
233 ,"Barren or Sparsely Vegetated" \ |
|
234 ,"Woody Savannas (N. Hem.)" \ |
|
235 ,"Savannas (N. Hem.)" \ |
|
236 ,"All Biome" \ |
|
237 /) |
|
238 nrow = dimsizes(row_head) |
|
239 |
|
240 ; arrays to be passed to table. |
|
241 text4 = new ((/nrow, ncol/),string ) |
|
242 |
|
243 do i=0,nrow-2 |
|
244 text4(i,0) = sprintf("%.1f",vv(i)) |
|
245 text4(i,1) = sprintf("%.1f",uu(i)) |
|
246 text4(i,2) = sprintf("%.2f",t_biome(i)) |
|
247 end do |
|
248 text4(nrow-1,0) = "-" |
|
249 text4(nrow-1,1) = "-" |
|
250 text4(nrow-1,2) = sprintf("%.2f",t_biome_avg) |
|
251 |
|
252 ;************************************************** |
|
253 ; html table |
|
254 ;************************************************** |
|
255 |
|
256 header_text = "<H1>"+component(k)+" Turnover Time: Model "+model_name+"</H1>" |
|
257 |
|
258 header = (/"<HTML>" \ |
|
259 ,"<HEAD>" \ |
|
260 ,"<TITLE>CLAMP metrics</TITLE>" \ |
|
261 ,"</HEAD>" \ |
|
262 ,header_text \ |
|
263 /) |
|
264 footer = "</HTML>" |
|
265 |
|
266 table_header = (/ \ |
|
267 "<table border=1 cellspacing=0 cellpadding=3 width=60%>" \ |
|
268 ,"<tr>" \ |
|
269 ," <th bgcolor=DDDDDD >Biome Class</th>" \ |
|
270 ," <th bgcolor=DDDDDD >"+col_head(0)+"</th>" \ |
|
271 ," <th bgcolor=DDDDDD >"+col_head(1)+"</th>" \ |
|
272 ," <th bgcolor=DDDDDD >"+col_head(2)+"</th>" \ |
|
273 ,"</tr>" \ |
|
274 /) |
|
275 table_footer = "</table>" |
|
276 row_header = "<tr>" |
|
277 row_footer = "</tr>" |
|
278 |
|
279 lines = new(50000,string) |
|
280 nline = 0 |
|
281 |
|
282 set_line(lines,nline,header) |
|
283 set_line(lines,nline,table_header) |
|
284 ;----------------------------------------------- |
|
285 ;row of table |
|
286 |
|
287 do n = 0,nrow-1 |
|
288 set_line(lines,nline,row_header) |
|
289 |
|
290 txt1 = row_head(n) |
|
291 txt2 = text4(n,0) |
|
292 txt3 = text4(n,1) |
|
293 txt4 = text4(n,2) |
|
294 |
|
295 set_line(lines,nline,"<th>"+txt1+"</th>") |
|
296 set_line(lines,nline,"<th>"+txt2+"</th>") |
|
297 set_line(lines,nline,"<th>"+txt3+"</th>") |
|
298 set_line(lines,nline,"<th>"+txt4+"</th>") |
|
299 |
|
300 set_line(lines,nline,row_footer) |
|
301 end do |
|
302 ;----------------------------------------------- |
|
303 set_line(lines,nline,table_footer) |
|
304 set_line(lines,nline,footer) |
|
305 |
|
306 ; Now write to an HTML file. |
|
307 idx = ind(.not.ismissing(lines)) |
|
308 if(.not.any(ismissing(idx))) then |
|
309 asciiwrite(output_html,lines(idx)) |
|
310 else |
|
311 print ("error?") |
|
312 end if |
|
313 |
|
314 delete (idx) |
|
315 end do |
|
316 end |
|
317 |