all/02.lai.ncl
author Forrest Hoffman <forrest@climatemodeling.org>
Mon, 26 Jan 2009 22:08:20 -0500
changeset 0 0c6405ab2ff4
child 1 4be95183fbcd
permissions -rw-r--r--
Initial commit of C-LAMP Diagnostics from Jeff Lee
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;**************************************************************
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl"
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"
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;**************************************************************
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procedure set_line(lines:string,nline:integer,newlines:string) 
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begin
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; add line to ascci/html file
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  nnewlines = dimsizes(newlines)
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  if(nline+nnewlines-1.ge.dimsizes(lines))
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    print("set_line: bad index, not setting anything.") 
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    return
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  end if 
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  lines(nline:nline+nnewlines-1) = newlines
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;  print ("lines = " + lines(nline:nline+nnewlines-1))
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  nline = nline + nnewlines
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  return 
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end
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;**************************************************************
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; Main code.
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begin
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  plot_type     = "ps"
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  plot_type_new = "png"
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;-----------------------------------------------------
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; edit table.html of current model for movel1_vs_model2
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  if (isvar("compare")) then
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     html_name2 = compare+"/table.html"  
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     html_new2  = html_name2 +".new"
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  end if
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;------------------------------------------------------
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; edit table.html for current model
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  html_name = model_name+"/table.html"  
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  html_new  = html_name +".new"
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;------------------------------------------------------
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; read data: model       
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  fm = addfile(dirm+film10,"r")      
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  laimod = fm->TLAI
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  delete (fm)
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  dsizes = dimsizes(laimod)
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  ntime  = dsizes(0)
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  nlat   = dsizes(1)
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  nlon   = dsizes(2)
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;-----------------------------------
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; get landfrac data
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 film_l   = "lnd_"+ model_grid + ".nc"
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 fm_l     = addfile (dirs+film_l,"r")  
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 landfrac = fm_l->landfrac
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 delete (fm_l)
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;----------------------------------
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; read biome data: model
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  biome_name_mod = "Model PFT Class"
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  film_c   = "class_pft_"+model_grid+".nc"
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  fm_c     = addfile(dirs+film_c,"r") 
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  classmod = fm_c->CLASS_PFT               
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  delete (fm_c)
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; model data has 17 land-type classes
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  nclass_mod = 17
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;----------------------------------------------------------
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; read data: ob       
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;----------------------------------
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; read biome data: observed
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  biome_name_ob = "MODIS LandCover"
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  dir_c = diro + "lai/"
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  filo_c = "land_class_"+model_grid+".nc"
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  fo = addfile(dir_c+filo_c,"r")
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  classob = tofloat(fo->LAND_CLASS)               
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  delete (fo)
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; input observed data has 20 land-type classes
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  nclass_ob = 20
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;---------------------------------
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; read lai data: observed
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  ;ob_name = "MODIS MOD 15A2 2000-2005"
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  ob_name = "MODIS MOD 15A2 2000-2004"
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  dir_l = diro + "lai/"
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  ;filo = "LAI_2000-2005_MONS_"+model_grid+".nc"
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  filo = "LAI_2000-2004_MONS_"+model_grid+".nc"
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  fo = addfile(dir_l+filo,"r")                
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  laiob = fo->LAI
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  delete (fo)
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;-------------------------------------------------
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; take into account landfrac
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  laimod = laimod * conform(laimod,landfrac,(/1,2/))
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  laiob  = laiob  * conform(laiob ,landfrac,(/1,2/))
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  delete (landfrac)
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;************************************************
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; global res
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;************************************************
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  resg                      = True             ; Use plot options
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  resg@cnFillOn             = True             ; Turn on color fill
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  resg@gsnSpreadColors      = True             ; use full colormap
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  resg@cnLinesOn            = False            ; Turn off contourn lines
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  resg@mpFillOn             = False            ; Turn off map fill
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  resg@cnLevelSelectionMode = "ManualLevels"   ; Manual contour invtervals
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;************************************************
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; plot global biome class: (1) observed
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;************************************************
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  resg@cnMinLevelValF       = 1.              ; Min level
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  resg@cnMaxLevelValF       = 19.             ; Max level
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  resg@cnLevelSpacingF      = 1.              ; interval
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  classob@_FillValue = 1.e+36
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  classob = where(classob.eq.0,classob@_FillValue,classob)
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  plot_name = "global_class_ob"
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  title     = biome_name_ob
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  resg@tiMainString  = title
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  wks = gsn_open_wks (plot_type,plot_name)   ; open workstation
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  gsn_define_colormap(wks,"gui_default")     ; choose colormap
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  plot = gsn_csm_contour_map_ce(wks,classob,resg)   
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  delete (wks)
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  system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
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         "rm "+plot_name+"."+plot_type)
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;************************************************
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; plot global biome class: (2) model
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;************************************************
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  resg@cnMinLevelValF       = 0.              ; Min level
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  resg@cnMaxLevelValF       = 16.             ; Max level
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  resg@cnLevelSpacingF      = 1.              ; interval
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  plot_name = "global_class_model"
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  title     = biome_name_mod
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  resg@tiMainString  = title
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  wks = gsn_open_wks (plot_type,plot_name)   ; open workstation
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  gsn_define_colormap(wks,"gui_default")     ; choose colormap
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  plot = gsn_csm_contour_map_ce(wks,classmod,resg)   
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  delete (wks)
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  system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
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         "rm "+plot_name+"."+plot_type)
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;*******************************************************************
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; for html table : all 3 components (Mean, Max, Phase)
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;*******************************************************************
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; column (not including header column)
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  component = (/"Mean","Max","Phase"/)
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  col_head  = (/"observed",model_name,"M_score" \
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               ,"observed",model_name,"M_score" \
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               ,"observed",model_name,"M_score" \
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               /)
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  n_comp = dimsizes(component) 
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  ncol   = dimsizes(col_head )
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; row (not including header row)
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;----------------------------------------------------
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; using model biome class:  
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  row_head  = (/"Not Vegetated" \
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               ,"Needleleaf Evergreen Temperate Tree" \
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               ,"Needleleaf Evergreen Boreal Tree" \
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;              ,"Needleleaf Deciduous Boreal Tree" \
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               ,"Broadleaf Evergreen Tropical Tree" \
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               ,"Broadleaf Evergreen Temperate Tree" \
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               ,"Broadleaf Deciduous Tropical Tree" \
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               ,"Broadleaf Deciduous Temperate Tree" \
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;              ,"Broadleaf Deciduous Boreal Tree" \
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;              ,"Broadleaf Evergreen Shrub" \
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               ,"Broadleaf Deciduous Temperate Shrub" \
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               ,"Broadleaf Deciduous Boreal Shrub" \
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               ,"C3 Arctic Grass" \
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               ,"C3 Non-Arctic Grass" \
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               ,"C4 Grass" \
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               ,"Corn" \
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;              ,"Wheat" \                      
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               ,"All Biomes" \                
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               /)  
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  nrow = dimsizes(row_head)                  
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; arrays to be passed to table. 
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  text = new ((/nrow, ncol/),string ) 
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; total M_score
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  M_total = 0.
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;********************************************************************
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; use land-type class to bin the data in equally spaced ranges
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;********************************************************************
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; using model biome class
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  nclass = nclass_mod
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  range  = fspan(0,nclass,nclass+1)
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; Use this range information to grab all the values in a
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; particular range, and then take an average.
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  nx = dimsizes(range) - 1
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; for 2 data: model and observed
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  data_n = 2
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; using model biome class
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  base = ndtooned(classmod)
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; output
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  yvalues = new((/data_n,nx/),float)
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  count   = new((/data_n,nx/),float)
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;************************************************************************
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; go through all components
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;************************************************************************
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 do m = 0,n_comp-1
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;===================
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; get data:
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;===================
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; (A) Mean
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  if (m .eq. 0) then
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     data_ob  = dim_avg_Wrap(laiob (lat|:,lon|:,time|:))
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     data_mod = dim_avg_Wrap(laimod(lat|:,lon|:,time|:))
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  end if
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; (B) Max
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  if (m .eq. 1) then
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;    observed  
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     data_ob = laiob(0,:,:)
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     data_ob@long_name = "Leaf Area Index Max"
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     do j = 0,nlat-1
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     do i = 0,nlon-1
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        data_ob(j,i) = max(laiob(:,j,i))
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     end do
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     end do          
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;    model  
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     data_mod = laimod(0,:,:)
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     data_mod@long_name = "Leaf Area Index Max"
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     do j = 0,nlat-1
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     do i = 0,nlon-1
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        data_mod(j,i) = max(laimod(:,j,i))
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     end do
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     end do
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  end if
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; (C) phase
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  if (m .eq. 2) then  
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;    observed
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     data_ob = laiob(0,:,:)
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     data_ob@long_name = "Leaf Area Index Max Month"
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     do j = 0,nlat-1
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     do i = 0,nlon-1 
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        data_ob(j,i) = maxind(laiob(:,j,i)) + 1
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     end do
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     end do          
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;    model
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     data_mod = laimod(0,:,:)
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     data_mod@long_name = "Leaf Area Index Max Month"
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     do j = 0,nlat-1
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     do i = 0,nlon-1 
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        data_mod(j,i) = maxind(laimod(:,j,i)) + 1
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     end do
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     end do
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  end if
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;==============================
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; put data into bins
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;==============================
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; Loop through each range, using base
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  do i=0,nx-1
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     if (i.ne.(nx-1)) then
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        idx = ind((base.ge.range(i)).and.(base.lt.range(i+1)))
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     else
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        idx = ind(base.ge.range(i))
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     end if
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;    loop through each dataset
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     do n = 0,data_n-1
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        if (n .eq. 0) then
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           data = ndtooned(data_ob)
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        end if
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        if (n .eq. 1) then
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           data = ndtooned(data_mod)
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        end if
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;       Calculate average 
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        if (.not.any(ismissing(idx))) then
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           yvalues(n,i) = avg(data(idx))
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           count(n,i)   = dimsizes(idx)
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        else
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           yvalues(n,i) = yvalues@_FillValue
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           count(n,i)   = 0
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        end if
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;#############################################################
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; using model biome class:
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;
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;     set the following 4 classes to _FillValue:
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;     (3)Needleleaf Deciduous Boreal Tree,
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;     (8)Broadleaf Deciduous Boreal Tree,
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;     (9)Broadleaf Evergreen Shrub,
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;     (16)Wheat
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      if (i.eq.3 .or. i.eq.8 .or. i.eq.9 .or. i.eq.16) then
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         yvalues(n,i) = yvalues@_FillValue
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         count(n,i)   = 0
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      end if
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;############################################################# 
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      delete(data)
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    end do                 ; n-loop
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    delete(idx)
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  end do                   ; i-loop
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;=====================================
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; compute correlation coef and M score 
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;=====================================
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  score_max = 5.0
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  u       = yvalues(0,:)
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  v       = yvalues(1,:)
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  u_count = count(0,:)
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  v_count = count(1,:)
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  good = ind(.not.ismissing(u) .and. .not.ismissing(v))
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  uu = u(good)
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  vv = v(good)
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  uu_count = u_count(good)
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  vv_count = v_count(good)
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; compute correlation coef
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  cc = esccr(uu,vv,0)
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  if (n .eq. 2) then
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     bias   = avg(abs(vv-uu))
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     bias   = where((bias.gt. 6.),12.-bias,bias)
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     Mscore = ((6. - bias)/6.)*score_max
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  else
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     bias  = sum(abs(vv-uu)/abs(vv+uu))
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     Mscore = (1.- (bias/dimsizes(uu)))*score_max
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  end if
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  M_score = sprintf("%.2f", Mscore)
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; compute M_total
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  M_total = M_total + Mscore
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;================================
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; output M_score to score sheet
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;===============================
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  if (isvar("compare")) then
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     system("sed -e '1,/M_lai_"+component(m)+"/s/M_lai_"+component(m)+"/"+M_score+"/' "+html_name2+" > "+html_new2+";"+ \
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            "mv -f "+html_new2+" "+html_name2)
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  end if
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  system("sed s#M_lai_"+component(m)+"#"+M_score+"# "+html_name+" > "+html_new+";"+ \
forrest@0
   418
         "mv -f "+html_new+" "+html_name)
forrest@0
   419
forrest@0
   420
;==============================
forrest@0
   421
; output M_score to html table
forrest@0
   422
;==============================
forrest@0
   423
forrest@0
   424
  n = m*3
forrest@0
   425
forrest@0
   426
  do i=0,nrow-2
forrest@0
   427
     text(i,n)   = sprintf("%.1f",uu(i))
forrest@0
   428
     text(i,n+1) = sprintf("%.1f",vv(i))
forrest@0
   429
     text(i,n+2) = "-"
forrest@0
   430
  end do
forrest@0
   431
  text(nrow-1,n)   = sprintf("%.1f",sum(uu*uu_count)/sum(uu_count))
forrest@0
   432
  text(nrow-1,n+1) = sprintf("%.1f",sum(vv*vv_count)/sum(vv_count))
forrest@0
   433
  text(nrow-1,n+2) = M_score
forrest@0
   434
forrest@0
   435
  delete (u)
forrest@0
   436
  delete (v)
forrest@0
   437
  delete (uu)
forrest@0
   438
  delete (vv)
forrest@0
   439
  delete (u_count)
forrest@0
   440
  delete (v_count)
forrest@0
   441
  delete (uu_count)
forrest@0
   442
  delete (vv_count)
forrest@0
   443
  delete (good)
forrest@0
   444
forrest@0
   445
;======================================== 
forrest@0
   446
; global res changes for each component
forrest@0
   447
;========================================
forrest@0
   448
  delta = 0.00001  
forrest@0
   449
forrest@0
   450
  if (m .eq. 0) then
forrest@0
   451
     resg@cnMinLevelValF       = 0.             
forrest@0
   452
     resg@cnMaxLevelValF       = 10.             
forrest@0
   453
     resg@cnLevelSpacingF      = 1.
forrest@0
   454
forrest@0
   455
     data_ob = where(ismissing(data_ob).and.(ismissing(data_mod).or.(data_mod.lt.delta)),0.,data_ob)
forrest@0
   456
  end if
forrest@0
   457
forrest@0
   458
  if (m .eq. 1) then
forrest@0
   459
     resg@cnMinLevelValF       = 0.             
forrest@0
   460
     resg@cnMaxLevelValF       = 10.             
forrest@0
   461
     resg@cnLevelSpacingF      = 1.
forrest@0
   462
forrest@0
   463
     data_ob = where(ismissing(data_ob).and.(ismissing(data_mod).or.(data_mod.lt.delta)),0.,data_ob)
forrest@0
   464
  end if
forrest@0
   465
forrest@0
   466
  if (m .eq. 2) then
forrest@0
   467
     resg@cnMinLevelValF       = 1.             
forrest@0
   468
     resg@cnMaxLevelValF       = 12.             
forrest@0
   469
     resg@cnLevelSpacingF      = 1.
forrest@0
   470
forrest@0
   471
     data_mod = where(ismissing(data_ob).or.(data_mod.lt.delta),data_mod@_FillValue,data_mod)
forrest@0
   472
     data_ob = where(ismissing(data_ob).and.(ismissing(data_mod).or.(data_mod.lt.delta)),0.,data_ob)
forrest@0
   473
forrest@0
   474
  end if
forrest@0
   475
forrest@0
   476
;=========================
forrest@0
   477
; global contour : ob
forrest@0
   478
;=========================
forrest@0
   479
  
forrest@0
   480
  plot_name = "global_"+component(m)+"_ob"
forrest@0
   481
  title     = ob_name
forrest@0
   482
  resg@tiMainString  = title
forrest@0
   483
forrest@0
   484
  wks = gsn_open_wks (plot_type,plot_name)   ; open workstation
forrest@0
   485
  gsn_define_colormap(wks,"gui_default")     ; choose colormap
forrest@0
   486
forrest@0
   487
  plot = gsn_csm_contour_map_ce(wks,data_ob,resg)   
forrest@0
   488
forrest@0
   489
  delete (wks)
forrest@0
   490
  delete (plot)
forrest@0
   491
forrest@0
   492
  system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
forrest@0
   493
         "rm "+plot_name+"."+plot_type)
forrest@0
   494
forrest@0
   495
;============================
forrest@0
   496
; global contour : model
forrest@0
   497
;============================
forrest@0
   498
forrest@0
   499
  plot_name = "global_"+component(m)+"_model"  
forrest@0
   500
  title     = "Model " + model_name
forrest@0
   501
  resg@tiMainString  = title
forrest@0
   502
forrest@0
   503
  wks = gsn_open_wks (plot_type,plot_name)
forrest@0
   504
  gsn_define_colormap(wks,"gui_default")     
forrest@0
   505
forrest@0
   506
  plot = gsn_csm_contour_map_ce(wks,data_mod,resg)   
forrest@0
   507
forrest@0
   508
  delete (wks)
forrest@0
   509
  delete (plot)
forrest@0
   510
forrest@0
   511
  system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
forrest@0
   512
         "rm "+plot_name+"."+plot_type)
forrest@0
   513
forrest@0
   514
;================================
forrest@0
   515
; global contour: model vs ob
forrest@0
   516
;================================
forrest@0
   517
forrest@0
   518
  plot_name = "global_"+component(m)+"_model_vs_ob"
forrest@0
   519
forrest@0
   520
  wks = gsn_open_wks (plot_type,plot_name)   
forrest@0
   521
  gsn_define_colormap(wks,"gui_default")     
forrest@0
   522
forrest@0
   523
  plot=new(3,graphic)                        ; create graphic array
forrest@0
   524
forrest@0
   525
  resg@gsnFrame             = False          ; Do not draw plot 
forrest@0
   526
  resg@gsnDraw              = False          ; Do not advance frame
forrest@0
   527
forrest@0
   528
; plot correlation coef
forrest@0
   529
forrest@0
   530
  gRes               = True
forrest@0
   531
  gRes@txFontHeightF = 0.02
forrest@0
   532
  gRes@txAngleF      = 90
forrest@0
   533
forrest@0
   534
  correlation_text = "(correlation coef = "+sprintf("%.2f", cc)+")"
forrest@0
   535
forrest@0
   536
  gsn_text_ndc(wks,correlation_text,0.20,0.50,gRes)
forrest@0
   537
  
forrest@0
   538
; plot ob
forrest@0
   539
forrest@0
   540
  title     = ob_name
forrest@0
   541
  resg@tiMainString  = title
forrest@0
   542
forrest@0
   543
  plot(0) = gsn_csm_contour_map_ce(wks,data_ob,resg)       
forrest@0
   544
forrest@0
   545
; plot model
forrest@0
   546
forrest@0
   547
  title     = "Model "+ model_name
forrest@0
   548
  resg@tiMainString  = title
forrest@0
   549
forrest@0
   550
  plot(1) = gsn_csm_contour_map_ce(wks,data_mod,resg) 
forrest@0
   551
forrest@0
   552
; plot model-ob
forrest@0
   553
forrest@0
   554
  if (m .eq. 0) then
forrest@0
   555
     resg@cnMinLevelValF  = -2.           
forrest@0
   556
     resg@cnMaxLevelValF  =  2.            
forrest@0
   557
     resg@cnLevelSpacingF =  0.4
forrest@0
   558
  end if
forrest@0
   559
forrest@0
   560
  if (m .eq. 1) then
forrest@0
   561
     resg@cnMinLevelValF  = -6.           
forrest@0
   562
     resg@cnMaxLevelValF  =  6.            
forrest@0
   563
     resg@cnLevelSpacingF =  1.
forrest@0
   564
  end if
forrest@0
   565
forrest@0
   566
  if (m .eq. 2) then
forrest@0
   567
     resg@cnMinLevelValF  = -6.           
forrest@0
   568
     resg@cnMaxLevelValF  =  6.            
forrest@0
   569
     resg@cnLevelSpacingF =  1.
forrest@0
   570
  end if
forrest@0
   571
forrest@0
   572
  zz = data_mod
forrest@0
   573
  zz = data_mod - data_ob
forrest@0
   574
  title = "Model_"+model_name+" - Observed"
forrest@0
   575
  resg@tiMainString    = title
forrest@0
   576
forrest@0
   577
  plot(2) = gsn_csm_contour_map_ce(wks,zz,resg) 
forrest@0
   578
forrest@0
   579
; plot panel
forrest@0
   580
forrest@0
   581
  pres                            = True        ; panel plot mods desired
forrest@0
   582
  pres@gsnMaximize                = True        ; fill the page
forrest@0
   583
forrest@0
   584
  gsn_panel(wks,plot,(/3,1/),pres)              ; create panel plot
forrest@0
   585
forrest@0
   586
  delete (wks)
forrest@0
   587
  delete (plot)
forrest@0
   588
forrest@0
   589
  system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
forrest@0
   590
         "rm "+plot_name+"."+plot_type)
forrest@0
   591
forrest@0
   592
  delete (data_ob)
forrest@0
   593
  delete (data_mod)
forrest@0
   594
forrest@0
   595
  resg@gsnFrame             = True          ; Do advance frame 
forrest@0
   596
  resg@gsnDraw              = True          ; Do draw plot
forrest@0
   597
forrest@0
   598
 end do    ; m-loop
forrest@0
   599
forrest@0
   600
;**************************************************
forrest@0
   601
; html table
forrest@0
   602
;**************************************************
forrest@0
   603
  output_html = "table_model_vs_ob.html"
forrest@0
   604
forrest@0
   605
  header_text = "<H1>LAI: Model "+model_name+" vs. MODIS observations</H1>" 
forrest@0
   606
forrest@0
   607
  header = (/"<HTML>" \
forrest@0
   608
            ,"<HEAD>" \
forrest@0
   609
            ,"<TITLE>CLAMP metrics</TITLE>" \
forrest@0
   610
            ,"</HEAD>" \
forrest@0
   611
            ,header_text \
forrest@0
   612
            /) 
forrest@0
   613
  footer = "</HTML>"
forrest@0
   614
forrest@0
   615
  table_header = (/ \
forrest@0
   616
        "<table border=1 cellspacing=0 cellpadding=3 width=100%>" \
forrest@0
   617
       ,"<tr>" \
forrest@0
   618
       ,"   <th bgcolor=DDDDDD rowspan=2>Biome Class</th>" \
forrest@0
   619
       ,"   <th bgcolor=DDDDDD colspan=3>"+component(0)+" (m2/m2)</th>" \
forrest@0
   620
       ,"   <th bgcolor=DDDDDD colspan=3>"+component(1)+" (m2/m2)</th>" \
forrest@0
   621
       ,"   <th bgcolor=DDDDDD colspan=3>"+component(2)+" (months)</th>" \
forrest@0
   622
       ,"   <th bgcolor=DDDDDD rowspan=2>Annual Plot</th>" \
forrest@0
   623
       ,"</tr>" \
forrest@0
   624
       ,"<tr>" \
forrest@0
   625
       ,"   <th bgcolor=DDDDDD >observed</th>" \
forrest@0
   626
       ,"   <th bgcolor=DDDDDD >"+model_name+"</th>" \
forrest@0
   627
       ,"   <th bgcolor=DDDDDD >M_score</th>" \
forrest@0
   628
       ,"   <th bgcolor=DDDDDD >observed</th>" \
forrest@0
   629
       ,"   <th bgcolor=DDDDDD >"+model_name+"</th>" \
forrest@0
   630
       ,"   <th bgcolor=DDDDDD >M_score</th>" \
forrest@0
   631
       ,"   <th bgcolor=DDDDDD >observed</th>" \
forrest@0
   632
       ,"   <th bgcolor=DDDDDD >"+model_name+"</th>" \
forrest@0
   633
       ,"   <th bgcolor=DDDDDD >M_score</th>" \
forrest@0
   634
       ,"</tr>" \
forrest@0
   635
       /)
forrest@0
   636
  table_footer = "</table>"
forrest@0
   637
  row_header = "<tr>"
forrest@0
   638
  row_footer = "</tr>"
forrest@0
   639
forrest@0
   640
  lines = new(50000,string)
forrest@0
   641
  nline = 0
forrest@0
   642
forrest@0
   643
  set_line(lines,nline,header)
forrest@0
   644
  set_line(lines,nline,table_header)
forrest@0
   645
;-----------------------------------------------
forrest@0
   646
;row of table
forrest@0
   647
forrest@0
   648
  do n = 0,nrow-1
forrest@0
   649
     set_line(lines,nline,row_header)
forrest@0
   650
forrest@0
   651
     txt1  = row_head(n)
forrest@0
   652
     txt2  = text(n,0)
forrest@0
   653
     txt3  = text(n,1)
forrest@0
   654
     txt4  = text(n,2)
forrest@0
   655
     txt5  = text(n,3)
forrest@0
   656
     txt6  = text(n,4)
forrest@0
   657
     txt7  = text(n,5)
forrest@0
   658
     txt8  = text(n,6)
forrest@0
   659
     txt9  = text(n,7)
forrest@0
   660
     txt10 = text(n,8)
forrest@0
   661
     txt11 = "<a href=./annual_biome_"+n+".png>model_vs_ob</a>" 
forrest@0
   662
forrest@0
   663
     set_line(lines,nline,"<th>"+txt1+"</th>")
forrest@0
   664
     set_line(lines,nline,"<th>"+txt2+"</th>")
forrest@0
   665
     set_line(lines,nline,"<th>"+txt3+"</th>")
forrest@0
   666
     set_line(lines,nline,"<th>"+txt4+"</th>")
forrest@0
   667
     set_line(lines,nline,"<th>"+txt5+"</th>")
forrest@0
   668
     set_line(lines,nline,"<th>"+txt6+"</th>")
forrest@0
   669
     set_line(lines,nline,"<th>"+txt7+"</th>")
forrest@0
   670
     set_line(lines,nline,"<th>"+txt8+"</th>")
forrest@0
   671
     set_line(lines,nline,"<th>"+txt9+"</th>")
forrest@0
   672
     set_line(lines,nline,"<th>"+txt10+"</th>")
forrest@0
   673
     set_line(lines,nline,"<th>"+txt11+"</th>")
forrest@0
   674
forrest@0
   675
     set_line(lines,nline,row_footer)
forrest@0
   676
  end do
forrest@0
   677
;-----------------------------------------------
forrest@0
   678
  set_line(lines,nline,table_footer)
forrest@0
   679
  set_line(lines,nline,footer) 
forrest@0
   680
forrest@0
   681
; Now write to an HTML file
forrest@0
   682
forrest@0
   683
  idx = ind(.not.ismissing(lines))
forrest@0
   684
  if(.not.any(ismissing(idx))) then
forrest@0
   685
    asciiwrite(output_html,lines(idx))
forrest@0
   686
  else
forrest@0
   687
   print ("error?")
forrest@0
   688
  end if
forrest@0
   689
forrest@0
   690
  delete (yvalues)
forrest@0
   691
  delete (count)
forrest@0
   692
  delete (idx)
forrest@0
   693
forrest@0
   694
;************************************************************************
forrest@0
   695
; go through all ntime
forrest@0
   696
;************************************************************************
forrest@0
   697
forrest@0
   698
; for 2 data: model and observed
forrest@0
   699
  data_n = 2
forrest@0
   700
forrest@0
   701
; using model biome class
forrest@0
   702
forrest@0
   703
  base = ndtooned(classmod)
forrest@0
   704
forrest@0
   705
; output
forrest@0
   706
forrest@0
   707
  yvalues = new((/data_n,nx,ntime/),float)
forrest@0
   708
forrest@0
   709
;==============================
forrest@0
   710
; put data into bins
forrest@0
   711
;==============================
forrest@0
   712
forrest@0
   713
; Loop through each range, using base
forrest@0
   714
forrest@0
   715
  do i=0,nx-1
forrest@0
   716
forrest@0
   717
     if (i.ne.(nx-1)) then
forrest@0
   718
        idx = ind((base.ge.range(i)).and.(base.lt.range(i+1)))
forrest@0
   719
     else
forrest@0
   720
        idx = ind(base.ge.range(i))
forrest@0
   721
     end if
forrest@0
   722
forrest@0
   723
;    loop through each dataset
forrest@0
   724
 
forrest@0
   725
     do n = 0,data_n-1
forrest@0
   726
forrest@0
   727
        do m = 0,ntime-1
forrest@0
   728
forrest@0
   729
        if (n .eq. 0) then
forrest@0
   730
           data = ndtooned(laiob (m,:,:))
forrest@0
   731
        end if
forrest@0
   732
forrest@0
   733
        if (n .eq. 1) then
forrest@0
   734
           data = ndtooned(laimod(m,:,:))
forrest@0
   735
        end if
forrest@0
   736
forrest@0
   737
;       Calculate average 
forrest@0
   738
forrest@0
   739
        if (.not.any(ismissing(idx))) then
forrest@0
   740
           yvalues(n,i,m) = avg(data(idx))
forrest@0
   741
        else
forrest@0
   742
           yvalues(n,i,m) = yvalues@_FillValue
forrest@0
   743
        end if
forrest@0
   744
forrest@0
   745
;#############################################################
forrest@0
   746
; using model biome class:
forrest@0
   747
;
forrest@0
   748
;     set the following 4 classes to _FillValue:
forrest@0
   749
;     (3)Needleleaf Deciduous Boreal Tree,
forrest@0
   750
;     (8)Broadleaf Deciduous Boreal Tree,
forrest@0
   751
;     (9)Broadleaf Evergreen Shrub,
forrest@0
   752
;     (16)Wheat
forrest@0
   753
forrest@0
   754
      if (i.eq.3 .or. i.eq.8 .or. i.eq.9 .or. i.eq.16) then
forrest@0
   755
         yvalues(n,i,m) = yvalues@_FillValue
forrest@0
   756
      end if
forrest@0
   757
;############################################################# 
forrest@0
   758
forrest@0
   759
      end do               ; m-loop
forrest@0
   760
forrest@0
   761
      delete(data)
forrest@0
   762
    end do                 ; n-loop
forrest@0
   763
forrest@0
   764
    delete(idx)
forrest@0
   765
  end do                   ; i-loop
forrest@0
   766
forrest@0
   767
  good = ind(.not.ismissing(yvalues(0,:,0)))  
forrest@0
   768
forrest@0
   769
  n_biome = dimsizes(good)
forrest@0
   770
forrest@0
   771
;----------------------------------------------------------------
forrest@0
   772
; data for tseries plot
forrest@0
   773
forrest@0
   774
  yvalues_g = new((/data_n,n_biome,ntime/),float)
forrest@0
   775
forrest@0
   776
  yvalues_g@units = ""
forrest@0
   777
forrest@0
   778
  yvalues_g = yvalues(:,good,:)
forrest@0
   779
forrest@0
   780
  delete (good)
forrest@0
   781
forrest@0
   782
;*******************************************************************
forrest@0
   783
; res for line plot
forrest@0
   784
;*******************************************************************
forrest@0
   785
; for x-axis in xyplot
forrest@0
   786
  mon = ispan(1,12,1)
forrest@0
   787
  mon@long_name = "month"
forrest@0
   788
forrest@0
   789
  res                   = True                      ; plot mods desired
forrest@0
   790
  res@xyLineThicknesses = (/2.0,2.0,2.0/)           ; make 2nd lines thicker
forrest@0
   791
  res@xyLineColors      = (/"blue","red"/)         ; change line color
forrest@0
   792
forrest@0
   793
; res@tiMainFontHeightF = 0.025                     ; size of title 
forrest@0
   794
forrest@0
   795
; Add a boxed legend using the more simple method
forrest@0
   796
  res@pmLegendDisplayMode    = "Always"
forrest@0
   797
; res@pmLegendWidthF         = 0.1
forrest@0
   798
  res@pmLegendWidthF         = 0.08
forrest@0
   799
  res@pmLegendHeightF        = 0.06
forrest@0
   800
; res@pmLegendOrthogonalPosF = -1.17
forrest@0
   801
; res@pmLegendOrthogonalPosF = -1.00  ;(downward)
forrest@0
   802
  res@pmLegendOrthogonalPosF = -0.30  ;(downward)
forrest@0
   803
forrest@0
   804
; res@pmLegendParallelPosF   =  0.18
forrest@0
   805
  res@pmLegendParallelPosF   =  0.23  ;(rightward)
forrest@0
   806
forrest@0
   807
; res@lgPerimOn             = False
forrest@0
   808
  res@lgLabelFontHeightF     = 0.015
forrest@0
   809
  res@xyExplicitLegendLabels = (/"observed",model_name/)
forrest@0
   810
forrest@0
   811
;************************************************************
forrest@0
   812
forrest@0
   813
  plot_data = new((/2,ntime/),float)
forrest@0
   814
  plot_data@long_name = "Leaf Area Index"
forrest@0
   815
forrest@0
   816
;----------------------------------------------
forrest@0
   817
; time series plot : per biome
forrest@0
   818
 
forrest@0
   819
  do m = 0, n_biome-1
forrest@0
   820
forrest@0
   821
     plot_name = "annual_biome_"+ m
forrest@0
   822
forrest@0
   823
     wks = gsn_open_wks (plot_type,plot_name) 
forrest@0
   824
forrest@0
   825
     title = "LAI : "+ row_head(m)
forrest@0
   826
     res@tiMainString = title
forrest@0
   827
forrest@0
   828
     plot_data(0,:) = yvalues_g(0,m,:)
forrest@0
   829
     plot_data(1,:) = yvalues_g(1,m,:)
forrest@0
   830
                                  
forrest@0
   831
     plot = gsn_csm_xy(wks,mon,plot_data,res)
forrest@0
   832
forrest@0
   833
     delete (wks)
forrest@0
   834
     delete (plot)
forrest@0
   835
forrest@0
   836
     system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
forrest@0
   837
            "rm "+plot_name+"."+plot_type)
forrest@0
   838
  end do
forrest@0
   839
forrest@0
   840
;--------------------------------------------
forrest@0
   841
; time series plot: all biome
forrest@0
   842
forrest@0
   843
     plot_name = "annual_biome_"+ n_biome
forrest@0
   844
forrest@0
   845
     wks = gsn_open_wks (plot_type,plot_name)   
forrest@0
   846
forrest@0
   847
     title = "LAI : "+ row_head(n_biome)
forrest@0
   848
     res@tiMainString = title
forrest@0
   849
forrest@0
   850
     do k = 0,ntime-1
forrest@0
   851
        plot_data(0,k) = avg(yvalues_g(0,:,k))
forrest@0
   852
        plot_data(1,k) = avg(yvalues_g(1,:,k))
forrest@0
   853
     end do
forrest@0
   854
                                  
forrest@0
   855
     plot = gsn_csm_xy(wks,mon,plot_data,res)
forrest@0
   856
forrest@0
   857
     delete (wks)
forrest@0
   858
     delete (plot)
forrest@0
   859
forrest@0
   860
     system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
forrest@0
   861
            "rm "+plot_name+"."+plot_type)
forrest@0
   862
forrest@0
   863
  delete (plot_data)
forrest@0
   864
forrest@0
   865
;***************************************************************************
forrest@0
   866
; write total score to file
forrest@0
   867
;***************************************************************************
forrest@0
   868
forrest@0
   869
  asciiwrite("M_save.lai", M_total)
forrest@0
   870
forrest@0
   871
;***************************************************************************
forrest@0
   872
; output plots
forrest@0
   873
;***************************************************************************
forrest@0
   874
  output_dir = model_name+"/lai"
forrest@0
   875
forrest@0
   876
  system("mv *.png *.html " + output_dir) 
forrest@0
   877
;***************************************************************************
forrest@0
   878
end
forrest@0
   879