all/07.beta.ncl
author Forrest Hoffman <forrest@climatemodeling.org>
Thu, 26 Mar 2009 14:02:21 -0400
changeset 1 4be95183fbcd
parent 0 0c6405ab2ff4
permissions -rw-r--r--
Modifications to scoring and graphics production for the final version of code for the C-LAMP paper in GCB.
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;********************************************************
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; hardwired: co2_i = 283.1878
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;            co2_f = 364.1252
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;
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;            beta_4_ob = 0.6
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;**************************************************************
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl"
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"
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;**************************************************************
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procedure set_line(lines:string,nline:integer,newlines:string) 
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begin
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; add line to ascci/html file
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  nnewlines = dimsizes(newlines)
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  if(nline+nnewlines-1.ge.dimsizes(lines))
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    print("set_line: bad index, not setting anything.") 
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    return
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  end if 
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  lines(nline:nline+nnewlines-1) = newlines
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;  print ("lines = " + lines(nline:nline+nnewlines-1))
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  nline = nline + nnewlines
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  return 
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end
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;**************************************************************
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; Main code.
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begin
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 plot_type     = "ps"
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 plot_type_new = "png"
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;------------------------------------------------------
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; edit table.html of current model for movel1_vs_model2
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 if (isvar("compare")) then
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    html_name2 = compare+"/table.html"  
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    html_new2  = html_name2 +".new"
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 end if
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;-------------------------------------------------------
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; edit table.html for current model
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 html_name = model_name+"/table.html"  
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 html_new  = html_name +".new"
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;-------------------------------------------------------
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; read model data
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;###############################################################
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; hardwired for model data 
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; these values correspond to the start and the end of model data
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 co2_i = 283.1878
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 co2_f = 364.1252
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 film_i = film6
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 film_f = film5
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;###############################################################
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 fm_i   = addfile (dirm+film_i,"r")
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 fm_f   = addfile (dirm+film_f,"r")
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 xm     = fm_f->lon  
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 ym     = fm_f->lat
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 npp_i  = fm_i->NPP
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 npp_f  = fm_f->NPP
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 delete (fm_i)
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 delete (fm_f)
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;Units for these variables are:
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;npp_i: g C/m^2/s
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 nsec_per_year = 60*60*24*365
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 npp_i = npp_i *  nsec_per_year
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 npp_f = npp_f *  nsec_per_year
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 unit = "gC/m2/year"
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;------------------------------
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; get landfrac data
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 film_l   = "lnd_" + model_grid + ".nc"
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 fm_l     = addfile (dirs+film_l,"r")  
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 landfrac = fm_l->landfrac
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 npp_i(0,:,:) = npp_i(0,:,:) * landfrac(:,:)
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 npp_f(0,:,:) = npp_f(0,:,:) * landfrac(:,:)
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 delete (fm_l)
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 delete (landfrac) 
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;-----------------------------
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; read biome data: model
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  biome_name_mod = "Model PFT Class"
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  film_c   = "class_pft_"+model_grid+".nc"
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  fm_c     = addfile (dirs+film_c,"r") 
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  classmod = fm_c->CLASS_PFT               
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  delete (fm_c)
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; model data has 17 land-type classes
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  nclass_mod = 17
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;---------------------------------------------------
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; read data: observed at stations
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 station = (/"DukeFACE" \
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            ,"AspenFACE" \
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            ,"ORNL-FACE" \
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            ,"POP-EUROFACE" \
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            /)
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 lat_ob  = (/ 35.58,  45.40,  35.54, 42.22/)
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 lon_ob  = (/-79.05, -89.37, -84.20, 11.48/)
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 lon_obx = where(lon_ob.lt.0.,lon_ob+360.,lon_ob)
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 n_sta  = dimsizes(station)
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 beta_4_ob = new((/n_sta/),float)
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;###################################################
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; this is a hardwired value
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 beta_4_ob = 0.60
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;###################################################
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;---------------------------------------------------
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; get model data at station 
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 npp_i_4  =linint2_points(xm,ym,npp_i,True,lon_obx,lat_ob,0)
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 npp_f_4  =linint2_points(xm,ym,npp_f,True,lon_obx,lat_ob,0)
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;---------------------------------------------------
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;compute beta_4
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 score_max = 10.
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 beta_4 = new((/n_sta/),float)
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 beta_4 = ((npp_f_4/npp_i_4) - 1.)/log(co2_f/co2_i)
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 beta_4_avg = avg(beta_4)
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 bias   = sum(abs(beta_4-beta_4_ob)/(abs(beta_4)+abs(beta_4_ob))) 
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 Mbeta  = (1. - (bias/n_sta))*score_max
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 M_beta = sprintf("%.2f", Mbeta)
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;=========================
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; for html table - station
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;=========================
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  output_html = "table_station.html"
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; column (not including header column)
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  col_head = (/"Latitude","Longitude","CO2_i","CO2_f","NPP_i","NPP_f","Beta_model","Beta_ob"/)
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  ncol = dimsizes(col_head)
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; row (not including header row)
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  row_head = (/"DukeFACE" \
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              ,"AspenFACE" \
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              ,"ORNL-FACE" \
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              ,"POP-EUROFACE" \
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              ,"All Station" \                
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              /)  
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  nrow = dimsizes(row_head)                  
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; arrays to be passed to table. 
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  text = new ((/nrow, ncol/),string )
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 do i=0,nrow-2
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  text(i,0) = sprintf("%.1f",lat_ob(i))
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  text(i,1) = sprintf("%.1f",lon_ob(i))
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  text(i,2) = sprintf("%.1f",co2_i)
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  text(i,3) = sprintf("%.1f",co2_f)
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  text(i,4) = sprintf("%.1f",npp_i_4(0,i))
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  text(i,5) = sprintf("%.1f",npp_f_4(0,i))
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  text(i,6) = sprintf("%.2f",beta_4(i))
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  text(i,7) = "-"
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 end do
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  text(nrow-1,0) = "-"
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  text(nrow-1,1) = "-"
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  text(nrow-1,2) = "-"
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  text(nrow-1,3) = "-"
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  text(nrow-1,4) = "-"
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  text(nrow-1,5) = "-"
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  text(nrow-1,6) = sprintf("%.2f",beta_4_avg)
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  text(nrow-1,7) = sprintf("%.2f",avg(beta_4_ob))
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;-----------
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; html table
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;-----------
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  header_text = "<H1>Beta Factor: Model "+model_name+"</H1>" 
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  header = (/"<HTML>" \
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            ,"<HEAD>" \
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            ,"<TITLE>CLAMP metrics</TITLE>" \
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            ,"</HEAD>" \
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            ,header_text \
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            /) 
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  footer = "</HTML>"
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  table_header = (/ \
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        "<table border=1 cellspacing=0 cellpadding=3 width=80%>" \
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       ,"<tr>" \
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       ,"   <th bgcolor=DDDDDD >Station</th>" \
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       ,"   <th bgcolor=DDDDDD >"+col_head(0)+"</th>" \
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       ,"   <th bgcolor=DDDDDD >"+col_head(1)+"</th>" \
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       ,"   <th bgcolor=DDDDDD >"+col_head(2)+"</th>" \
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       ,"   <th bgcolor=DDDDDD >"+col_head(3)+"</th>" \
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       ,"   <th bgcolor=DDDDDD >"+col_head(4)+"<br>("+unit+")</th>" \
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       ,"   <th bgcolor=DDDDDD >"+col_head(5)+"<br>("+unit+")</th>" \
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       ,"   <th bgcolor=DDDDDD >"+col_head(6)+"</th>" \
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       ,"   <th bgcolor=DDDDDD >"+col_head(7)+"</th>" \
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       ,"</tr>" \
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       /)
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  table_footer = "</table>"
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  row_header = "<tr>"
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  row_footer = "</tr>"
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  lines = new(50000,string)
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  nline = 0
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  set_line(lines,nline,header)
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  set_line(lines,nline,table_header)
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;-----------------------------------------------
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;row of table
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  do n = 0,nrow-1
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     set_line(lines,nline,row_header)
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     txt1 = row_head(n)
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     txt2 = text(n,0)
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     txt3 = text(n,1)
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     txt4 = text(n,2)
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     txt5 = text(n,3)
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     txt6 = text(n,4)
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     txt7 = text(n,5)
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     txt8 = text(n,6)
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     txt9 = text(n,7)
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     set_line(lines,nline,"<th>"+txt1+"</th>")
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     set_line(lines,nline,"<th>"+txt2+"</th>")
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     set_line(lines,nline,"<th>"+txt3+"</th>")
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     set_line(lines,nline,"<th>"+txt4+"</th>")
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     set_line(lines,nline,"<th>"+txt5+"</th>")
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     set_line(lines,nline,"<th>"+txt6+"</th>")
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     set_line(lines,nline,"<th>"+txt7+"</th>")
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     set_line(lines,nline,"<th>"+txt8+"</th>")
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     set_line(lines,nline,"<th>"+txt9+"</th>")
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     set_line(lines,nline,row_footer)
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  end do
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;-----------------------------------------------
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  set_line(lines,nline,table_footer)
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  set_line(lines,nline,footer) 
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; Now write to an HTML file.
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  idx = ind(.not.ismissing(lines))
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  if(.not.any(ismissing(idx))) then
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    asciiwrite(output_html,lines(idx))
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  else
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   print ("error?")
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  end if
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  delete (col_head)
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  delete (row_head)
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  delete (text)
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  delete (table_header)
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  delete (idx)
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;********************************************************************
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; use land-type class to bin the data in equally spaced ranges
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;********************************************************************
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; using model biome class
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  nclass = nclass_mod
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  range  = fspan(0,nclass,nclass+1)
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; Use this range information to grab all the values in a
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; particular range, and then take an average.
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  nx = dimsizes(range) - 1
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;==============================
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; put data into bins
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;==============================
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; for model data and observed
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  data_n = 2
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; using model biome class
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  base = ndtooned(classmod)
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; output
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  yvalues = new((/data_n,nx/),float)
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  count   = new((/data_n,nx/),float)
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; Loop through each range, using base
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  do i=0,nx-1
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     if (i.ne.(nx-1)) then
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        idx = ind((base.ge.range(i)).and.(base.lt.range(i+1)))
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     else
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        idx = ind(base.ge.range(i))
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     end if
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;    loop through each dataset
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     do n = 0,data_n-1
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        if (n .eq. 0) then
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           data = ndtooned(npp_i)
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        end if
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        if (n .eq. 1) then
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           data = ndtooned(npp_f)
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        end if
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;       Calculate average 
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        if (.not.any(ismissing(idx))) then
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           yvalues(n,i) = avg(data(idx))
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           count(n,i)   = dimsizes(idx)
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        else
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           yvalues(n,i) = yvalues@_FillValue
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           count(n,i)   = 0
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        end if
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;#############################################################
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; using model biome class:
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;
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;     set the following 4 classes to _FillValue:
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;     (3)Needleleaf Deciduous Boreal Tree,
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;     (8)Broadleaf Deciduous Boreal Tree,
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;     (9)Broadleaf Evergreen Shrub,
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;     (16)Wheat
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      if (i.eq.3 .or. i.eq.8 .or. i.eq.9 .or. i.eq.16) then
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         yvalues(n,i) = yvalues@_FillValue
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         count(n,i)   = 0
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      end if
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;############################################################# 
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      delete(data)
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    end do                 ; n-loop
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    delete(idx)
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  end do                   ; i-loop
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  delete (base)
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  delete (npp_i)
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  delete (npp_f)
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;============================
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;compute beta
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;============================
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 u       = yvalues(0,:)
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 v       = yvalues(1,:)
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 u_count = count(0,:)
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 v_count = count(1,:)
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 good = ind(.not.ismissing(u) .and. .not.ismissing(v))
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 uu       = u(good)
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 vv       = v(good)
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 uu_count = u_count(good)
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 vv_count = v_count(good) 
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 n_biome = dimsizes(uu)
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 beta_biome = new((/n_biome/),float)
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 beta_biome = ((vv/uu) - 1.)/log(co2_f/co2_i)
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 beta_biome_avg = (sum(vv*vv_count)/sum(uu*uu_count) - 1.)/log(co2_f/co2_i)
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;===========================
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; for html table - biome
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;===========================
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  output_html = "table_biome.html"
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; column (not including header column)
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  col_head = (/"CO2_i","CO2_f","NPP_i","NPP_f","Beta_model"/)
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  ncol = dimsizes(col_head)
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; row (not including header row)
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;----------------------------------------------------
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; using model biome class:
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;  
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  row_head  = (/"Not Vegetated" \
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               ,"Needleleaf Evergreen Temperate Tree" \
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   406
               ,"Needleleaf Evergreen Boreal Tree" \
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   407
;              ,"Needleleaf Deciduous Boreal Tree" \
forrest@0
   408
               ,"Broadleaf Evergreen Tropical Tree" \
forrest@0
   409
               ,"Broadleaf Evergreen Temperate Tree" \
forrest@0
   410
               ,"Broadleaf Deciduous Tropical Tree" \
forrest@0
   411
               ,"Broadleaf Deciduous Temperate Tree" \
forrest@0
   412
;              ,"Broadleaf Deciduous Boreal Tree" \
forrest@0
   413
;              ,"Broadleaf Evergreen Shrub" \
forrest@0
   414
               ,"Broadleaf Deciduous Temperate Shrub" \
forrest@0
   415
               ,"Broadleaf Deciduous Boreal Shrub" \
forrest@0
   416
               ,"C3 Arctic Grass" \
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   417
               ,"C3 Non-Arctic Grass" \
forrest@0
   418
               ,"C4 Grass" \
forrest@0
   419
               ,"Corn" \
forrest@0
   420
;              ,"Wheat" \                      
forrest@0
   421
               ,"All Biome" \                
forrest@0
   422
               /)  
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   423
forrest@0
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  nrow = dimsizes(row_head)                  
forrest@0
   425
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   426
; arrays to be passed to table. 
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   427
  text = new ((/nrow, ncol/),string )
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   428
 
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   429
 do i=0,nrow-2
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  text(i,0) = sprintf("%.1f",co2_i)
forrest@0
   431
  text(i,1) = sprintf("%.1f",co2_f)
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   432
  text(i,2) = sprintf("%.1f",uu(i))
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   433
  text(i,3) = sprintf("%.1f",vv(i))
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   434
  text(i,4) = sprintf("%.2f",beta_biome(i))
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   435
 end do
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   436
  text(nrow-1,0) = "-"
forrest@0
   437
  text(nrow-1,1) = "-"
forrest@0
   438
  text(nrow-1,2) = "-"
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   439
  text(nrow-1,3) = "-"
forrest@0
   440
  text(nrow-1,4) = sprintf("%.2f",beta_biome_avg)
forrest@0
   441
forrest@0
   442
;**************************************************
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   443
; html table
forrest@0
   444
;**************************************************
forrest@0
   445
forrest@0
   446
  header_text = "<H1>Beta Factor: Model "+model_name+"</H1>" 
forrest@0
   447
forrest@0
   448
  header = (/"<HTML>" \
forrest@0
   449
            ,"<HEAD>" \
forrest@0
   450
            ,"<TITLE>CLAMP metrics</TITLE>" \
forrest@0
   451
            ,"</HEAD>" \
forrest@0
   452
            ,header_text \
forrest@0
   453
            /) 
forrest@0
   454
  footer = "</HTML>"
forrest@0
   455
forrest@0
   456
  table_header = (/ \
forrest@0
   457
        "<table border=1 cellspacing=0 cellpadding=3 width=80%>" \
forrest@0
   458
       ,"<tr>" \
forrest@0
   459
       ,"   <th bgcolor=DDDDDD >Biome Class</th>" \
forrest@0
   460
       ,"   <th bgcolor=DDDDDD >"+col_head(0)+"</th>" \
forrest@0
   461
       ,"   <th bgcolor=DDDDDD >"+col_head(1)+"</th>" \
forrest@0
   462
       ,"   <th bgcolor=DDDDDD >"+col_head(2)+"</th>" \
forrest@0
   463
       ,"   <th bgcolor=DDDDDD >"+col_head(3)+"</th>" \
forrest@0
   464
       ,"   <th bgcolor=DDDDDD >"+col_head(4)+"</th>" \
forrest@0
   465
       ,"</tr>" \
forrest@0
   466
       /)
forrest@0
   467
  table_footer = "</table>"
forrest@0
   468
  row_header = "<tr>"
forrest@0
   469
  row_footer = "</tr>"
forrest@0
   470
forrest@0
   471
  lines = new(50000,string)
forrest@0
   472
  nline = 0
forrest@0
   473
forrest@0
   474
  set_line(lines,nline,header)
forrest@0
   475
  set_line(lines,nline,table_header)
forrest@0
   476
;-----------------------------------------------
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   477
;row of table
forrest@0
   478
forrest@0
   479
  do n = 0,nrow-1
forrest@0
   480
     set_line(lines,nline,row_header)
forrest@0
   481
forrest@0
   482
     txt1  = row_head(n)
forrest@0
   483
     txt2  = text(n,0)
forrest@0
   484
     txt3  = text(n,1)
forrest@0
   485
     txt4  = text(n,2)
forrest@0
   486
     txt5  = text(n,3)
forrest@0
   487
     txt6  = text(n,4)
forrest@0
   488
forrest@0
   489
     set_line(lines,nline,"<th>"+txt1+"</th>")
forrest@0
   490
     set_line(lines,nline,"<th>"+txt2+"</th>")
forrest@0
   491
     set_line(lines,nline,"<th>"+txt3+"</th>")
forrest@0
   492
     set_line(lines,nline,"<th>"+txt4+"</th>")
forrest@0
   493
     set_line(lines,nline,"<th>"+txt5+"</th>")
forrest@0
   494
     set_line(lines,nline,"<th>"+txt6+"</th>")
forrest@0
   495
forrest@0
   496
     set_line(lines,nline,row_footer)
forrest@0
   497
  end do
forrest@0
   498
;-----------------------------------------------
forrest@0
   499
  set_line(lines,nline,table_footer)
forrest@0
   500
  set_line(lines,nline,footer) 
forrest@0
   501
forrest@0
   502
; Now write to an HTML file
forrest@0
   503
forrest@0
   504
  idx = ind(.not.ismissing(lines))
forrest@0
   505
  if(.not.any(ismissing(idx))) then
forrest@0
   506
    asciiwrite(output_html,lines(idx))
forrest@0
   507
  else
forrest@0
   508
   print ("error?")
forrest@0
   509
  end if
forrest@0
   510
  delete (idx)
forrest@0
   511
forrest@0
   512
;**************************************************************************************
forrest@0
   513
; update score
forrest@0
   514
;**************************************************************************************
forrest@0
   515
  if (isvar("compare")) then
forrest@0
   516
     system("sed -e '1,/M_beta/s/M_beta/"+M_beta+"/' "+html_name2+" > "+html_new2+";"+ \
forrest@0
   517
            "mv -f "+html_new2+" "+html_name2)
forrest@0
   518
  end if
forrest@0
   519
forrest@0
   520
  system("sed s#M_beta#"+M_beta+"# "+html_name+" > "+html_new+";"+ \
forrest@0
   521
         "mv -f "+html_new+" "+html_name)
forrest@0
   522
forrest@0
   523
;***************************************************************************
forrest@0
   524
; get total score and write to file
forrest@0
   525
;***************************************************************************
forrest@0
   526
  M_total = Mbeta
forrest@0
   527
forrest@0
   528
  asciiwrite("M_save.beta", M_total)
forrest@0
   529
forrest@0
   530
  delete (M_total)
forrest@0
   531
forrest@0
   532
;***************************************************************************
forrest@0
   533
; output plot and html
forrest@0
   534
;***************************************************************************
forrest@0
   535
  output_dir = model_name+"/beta"
forrest@0
   536
forrest@0
   537
  system("mv *.html " + output_dir) 
forrest@0
   538
;***************************************************************************
forrest@0
   539
forrest@0
   540
end
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   541