all/11.ameriflux.ncl
author Forrest Hoffman <forrest@climatemodeling.org>
Thu, 26 Mar 2009 14:02:21 -0400
changeset 1 4be95183fbcd
parent 0 0c6405ab2ff4
permissions -rw-r--r--
Modifications to scoring and graphics production for the final version of code for the C-LAMP paper in GCB.
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;************************************************************
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl"
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_csm.ncl"
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load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"
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;************************************************************
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procedure set_line(lines:string,nline:integer,newlines:string) 
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begin
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; add line to ascci/html file
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  nnewlines = dimsizes(newlines)
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  if(nline+nnewlines-1.ge.dimsizes(lines))
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    print("set_line: bad index, not setting anything.") 
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    return
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  end if 
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  lines(nline:nline+nnewlines-1) = newlines
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;  print ("lines = " + lines(nline:nline+nnewlines-1))
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  nline = nline + nnewlines
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  return 
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end
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;*************************************************************
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begin
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  plot_type     = "ps"
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  plot_type_new = "png"
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;------------------------------------------------------
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; edit table.html of current model for movel1_vs_model2
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 if (isvar("compare")) then
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    html_name2 = compare+"/table.html"  
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    html_new2  = html_name2 +".new"
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 end if
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;------------------------------------------------------
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; edit table.html for current model
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 html_name = model_name+"/table.html"  
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 html_new  = html_name +".new"
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;------------------------------------------------------
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  nmonth = 12
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; for nee, gpp, and ar
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; observed unit is gC/m2/day
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; model    unit is gC/m2/s
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; to change to observed unit,
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  factor_flux = 86400.
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; for incident solar radiation,
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; observed Rg_f unit is MJ/m2/day
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; model (FSDS)  unit is  W/m2
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; to change to model unit,
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  factor_rad = 1.e6/86400.
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;************************************************
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; observed data info
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;************************************************
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 station = (/"ARM_Oklahoma" \
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            ,"ARM_Oklahoma_burn" \
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            ,"ARM_Oklahoma_control" \
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            ,"Atqasuk" \
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            ,"Audubon" \
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            ,"AustinCary" \
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            ,"Bartlett" \
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            ,"Bondville" \
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            ,"Brookings" \
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            ,"Donaldson" \
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            ,"Duke_Forest_Hardwoods" \
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            ,"Duke_Forest_Open_Field" \
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            ,"Duke_Forest_Pine" \
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            ,"Fermi_Ag" \
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            ,"Fermi_Prairie" \
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            ,"Flagstaff_Managed" \
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            ,"Flagstaff_Unmanaged" \
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            ,"Flagstaff_Wildfire" \
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            ,"FortPeck" \
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            ,"FreemanRanch_mesquite" \
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            ,"Goodwin_Creek" \
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            ,"HarvardForest" \
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            ,"HarvardForestHemlock" \
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            ,"HowlandForestMain" \
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            ,"HowlandForestWest" \
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            ,"Ivotuk" \
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            ,"KendallGrasslands" \
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            ,"KennedySpaceCenterPine" \
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            ,"KennedySpaceCenterScrub" \
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            ,"LittleProspect" \
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            ,"LostCreek" \
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            ,"Mead-irrigated" \
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            ,"Mead-irrigated-rotation" \
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            ,"Mead-rainfed" \
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            ,"Metolius_2nd_YoungPonderosaPine" \
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            ,"MetoliusEyerly" \
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            ,"MetoliusIntermediatePine" \
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            ,"MetoliusOldPonderosaPine" \
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            ,"MissouriOzark" \
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            ,"Mize" \
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            ,"MorganMonroe" \
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            ,"NiwotRidge" \
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            ,"NorthCarolina_cc" \
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            ,"NorthCarolina_lp" \
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            ,"ParkFalls" \
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            ,"Rayonier" \
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            ,"SantaRita" \
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            ,"SkyOaks_Old" \
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            ,"SkyOaks_PostFire" \
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            ,"SkyOaks_Young" \
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            ,"SylvaniaWilderness" \
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            ,"Toledo" \
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            ,"Tonzi" \
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            ,"UCI_1850" \
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            ,"UCI_1930" \
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            ,"UCI_1964" \
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            ,"UCI_1964wet" \
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            ,"UCI_1981" \
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            ,"UCI_1989" \
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            ,"UCI_1998" \
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            ,"UMBS" \
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            ,"Vaira" \
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            ,"WalkerBranch" \
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            ,"WillowCreek" \
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            ,"WindRiver" \
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            ,"Wisconsin_ihw" \
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            ,"Wisconsin_irp" \
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            ,"Wisconsin_mrp" \
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            ,"Wisconsin_myjp" \
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            ,"Wisconsin_pb" \
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            ,"Wisconsin_rpcc" \
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            ,"Wisconsin_yhw" \
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            ,"Wisconsin_yjp" \
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            ,"Wisconsin_yrp" \
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            /)
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 field   = (/"NEE Flux" \
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            ,"Shortwave Incoming" \
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            ,"Latent Heat" \
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            ,"Sensible Heat" \
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            ,"GPP Flux" \
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            ,"Respiration" \
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            /)
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 field_unit = (/"gC/m2/day" \
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               ,"W/m2" \
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               ,"W/m2" \
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               ,"W/m2" \
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               ,"gC/m2/day" \
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               ,"gC/m2/day" \
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               /)
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 nstation = dimsizes(station)
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 nfield   = dimsizes(field)
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;========================================================================
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; get observed info: number of year, first/last year, lat, lon
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; and annual data
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 dir_root = diro + "ameriflux/"
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 year_station = new ((/nstation/),integer) ; number of year
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 year_ob      = new ((/nstation/),string)  ; observed year
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 year_ob_i    = new ((/nstation/),integer) ; first year
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 year_ob_f    = new ((/nstation/),integer) ; last year
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 lat_ob       = new ((/nstation/),float)   ; latitude
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 lon_ob       = new ((/nstation/),float)   ; longitude 
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 data_ob_ann  = new ((/nfield, nmonth, nstation/),float)
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 do n = 0, nstation-1
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    dir_f = dir_root + station(n)+"/"
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    fil_f = "timeseries_L4_m.nc"
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    fo   = addfile (dir_f+fil_f,"r")
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    lat_ob(n) = fo->lat
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    lon_ob(n) = fo->lon
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    year      = fo->year
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    year_station(n) = dimsizes(year)
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    year_ob_i(n)    = year(0)
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    year_ob_f(n)    = year(year_station(n)-1)
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    year_ob(n)      = year_ob_i(n) + "-" + year_ob_f(n)
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    delete (year)
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    data = fo->NEE_or_fMDS
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    data_ob_ann(0,:,n) = dim_avg(data(month|:,year|:))
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    data = fo->Rg_f
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    data_ob_ann(1,:,n) = dim_avg(data(month|:,year|:)) * factor_rad
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    data = fo->LE_f
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    data_ob_ann(2,:,n) = dim_avg(data(month|:,year|:))
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    data = fo->H_f
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    data_ob_ann(3,:,n) = dim_avg(data(month|:,year|:))
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    data = fo->GPP_or_MDS
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    data_ob_ann(4,:,n) = dim_avg(data(month|:,year|:))
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    data = fo->Reco_or
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    data_ob_ann(5,:,n) = dim_avg(data(month|:,year|:))
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    delete (data) 
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    delete (fo)   
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 end do
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;--------------------------------------------------------------
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; find (# of year observed) >=4 and year_ob_i <= 2001
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 i_long_ob = ind(year_station .ge. 4 .and. year_ob_i .le. 2001)
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 station_long      = station(i_long_ob)
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 lat_ob_long       = lat_ob(i_long_ob)
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 lon_ob_long       = lat_ob(i_long_ob)
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 year_ob_long      = year_ob(i_long_ob)
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 year_ob_i_long    = year_ob_i(i_long_ob)
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 year_ob_f_long    = year_ob_f(i_long_ob)
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 year_station_long = year_station(i_long_ob)
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 nstation_long     = dimsizes(station_long)
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;=========================================================
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;   get model data at observed lat-lon
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    fm   = addfile (dirm+film8,"r")
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    xm   = fm->lon
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    ym   = fm->lat 
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    date = fm->date
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    date_dim = dimsizes(date)
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    nyear  = date_dim(0)
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    data_mod      = new ((/nfield,nyear,nmonth,nstation/),float)
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    data_mod_ann  = new ((/nfield,nmonth,nstation/),float)
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    data_mod_long = new ((/nfield,nyear,nmonth,nstation_long/),float)
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;   change to unit of observed (u mol/m2/s)
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;   Model_units [=] gC/m2/s
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;   12. = molecular weight of C
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;   u mol = 1e-6 mol
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    factor = 1.e6 /12.
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;------------------------------------------------------------
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;   interpolate model data into observed station
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;   note: model is 0-360E, 90S-90N
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;   to be able to handle observation at (-89.98,-24.80)
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    ym(0) = -90.
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;------------------------------------------------------------  
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if (ENERGY .eq. "old") then
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  data = fm->NEE
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(0,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
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  data_mod(0,:,:,:) = yy(:,:,:) * factor_flux
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;;data  = fm->NETRAD
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; data  = fm->FSA
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; data1 = fm->FIRA
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; data  = data - data1
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; delete (data1)
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  data  = fm->FSDS
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(1,:,:)= dim_avg(yy(month|:,pts|:,year|:))
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  data_mod(1,:,:,:) = yy(:,:,:)  
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; data  = fm->LATENT
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  data  = fm->FCEV
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  data1 = fm->FCTR
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  data2 = fm->FGEV
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  data  = data + data1 + data2
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(2,:,:)= dim_avg(yy(month|:,pts|:,year|:))
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  data_mod(2,:,:,:) = yy(:,:,:) 
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  delete (data1)
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  delete (data2)
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; data = fm->SENSIBLE
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  data  = fm->FSH
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(3,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
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  data_mod(3,:,:,:) = yy(:,:,:)  
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else
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  data = fm->NEE
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(0,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
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  data_mod(0,:,:,:) = yy(:,:,:) * factor_flux
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; data = fm->NETRAD
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  data = fm->FSDS
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(1,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
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  data_mod(1,:,:,:) = yy(:,:,:) 
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  data = fm->LATENT
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(2,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
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  data_mod(2,:,:,:) = yy(:,:,:) 
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; data = fm->SENSIBLE
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  data = fm->FSH
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(3,:,:)= dim_avg(yy(month|:,pts|:,year|:)) 
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  data_mod(3,:,:,:) = yy(:,:,:) 
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end if
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  data = fm->GPP
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(4,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
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  data_mod(4,:,:,:) = yy(:,:,:) * factor_flux 
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  data = fm->ER
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  yy = linint2_points_Wrap(xm,ym,data,True,lon_ob,lat_ob,0)
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  data_mod_ann(5,:,:)= dim_avg(yy(month|:,pts|:,year|:)) * factor_flux
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  data_mod(5,:,:,:) = yy(:,:,:) * factor_flux
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  data_mod_long(:,:,:,:) = data_mod(:,:,:,i_long_ob)
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  delete (data_mod)
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  delete (fm) 
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  delete (data)
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  delete (yy)
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;*******************************************************************
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; for station line plot
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;*******************************************************************
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; for x-axis in xyplot
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  mon = ispan(1,12,1)
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  mon@long_name = "month"
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  res                   = True               ; plot mods desired
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  res@xyLineThicknesses = (/2.0,2.0/)        ; make 2nd lines thicker
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  res@xyLineColors      = (/"blue","red"/)   ; line color (ob,model)
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  res@tmXBFormat  = "f"                      ; not to add trailing zeros
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;-------------------------------------------------------------------------
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; Add a boxed legend using the more simple method
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  res@pmLegendDisplayMode    = "Always"
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; res@pmLegendWidthF         = 0.1
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  res@pmLegendWidthF         = 0.08
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  res@pmLegendHeightF        = 0.06
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; res@pmLegendOrthogonalPosF = -1.17
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; res@pmLegendOrthogonalPosF = -1.00  ;(downward)
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  res@pmLegendOrthogonalPosF = -0.30  ;(downward)
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; res@pmLegendParallelPosF   =  0.18
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  res@pmLegendParallelPosF   =  0.23  ;(rightward)
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; res@lgPerimOn             = False
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  res@lgLabelFontHeightF     = 0.015
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  res@xyExplicitLegendLabels = (/"observed",model_name/)
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;-------------------------------------------------------------------
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; for panel plot
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  res@gsnFrame     = False                   ; Do not draw plot 
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  res@gsnDraw      = False                   ; Do not advance frame
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   373
  pres                            = True     ; panel plot mods desired
forrest@0
   374
  pres@gsnPanelYWhiteSpacePercent = 5        ; increase white space around
forrest@0
   375
                                             ; indiv. plots in panel
forrest@0
   376
  pres@gsnMaximize                = True     ; fill the page
forrest@0
   377
;-------------------------------------------------------------------
forrest@0
   378
forrest@0
   379
; change longitude from 0-360 to -180-180
forrest@0
   380
  lon_ob      = where(lon_ob      .gt. 180.,lon_ob-360.,      lon_ob)
forrest@0
   381
  lon_ob_long = where(lon_ob_long .gt. 180.,lon_ob_long-360., lon_ob_long)
forrest@0
   382
forrest@0
   383
;==============================================================
forrest@0
   384
; get ob data at each site with long observation
forrest@0
   385
forrest@0
   386
  do n = 0,nstation_long-1
forrest@0
   387
forrest@0
   388
;##################################################################
forrest@0
   389
; hardwired: model    up to year 2004
forrest@0
   390
;            observed up to year 2006
forrest@0
   391
forrest@0
   392
    year_setback = 0
forrest@0
   393
forrest@0
   394
    nyear = year_station_long(n)
forrest@0
   395
forrest@0
   396
    if (year_ob_f_long(n).eq. 2006) then
forrest@0
   397
       year_setback = 2006 -2004
forrest@0
   398
    end if
forrest@0
   399
    if (year_ob_f_long(n).eq. 2005) then
forrest@0
   400
       year_setback = 2005 -2004
forrest@0
   401
    end if
forrest@0
   402
;##################################################################
forrest@0
   403
    
forrest@0
   404
    ntime = (nyear - year_setback) * nmonth
forrest@0
   405
forrest@0
   406
    data_ob   = new ((/nfield, nyear, nmonth/),float)
forrest@0
   407
forrest@0
   408
    dir_f = dir_root + station_long(n)+"/"
forrest@0
   409
    fil_f = "timeseries_L4_m.nc"
forrest@0
   410
    fo    = addfile (dir_f+fil_f,"r")
forrest@0
   411
forrest@0
   412
    data_ob(0,:,:) = fo->NEE_or_fMDS
forrest@0
   413
    data_ob(1,:,:) = fo->Rg_f
forrest@0
   414
    data_ob(2,:,:) = fo->LE_f
forrest@0
   415
    data_ob(3,:,:) = fo->H_f
forrest@0
   416
    data_ob(4,:,:) = fo->GPP_or_MDS
forrest@0
   417
    data_ob(5,:,:) = fo->Reco_or
forrest@0
   418
forrest@0
   419
    data_ob(1,:,:) = data_ob(1,:,:) * factor_rad
forrest@0
   420
forrest@0
   421
    delete (fo)
forrest@0
   422
forrest@0
   423
    timeI = new((/ntime/),integer)
forrest@0
   424
    timeF = new((/ntime/),float)
forrest@0
   425
    timeI = ispan(1,ntime,1)
forrest@0
   426
    timeF = year_ob_i_long(n) + (timeI-1)/12.
forrest@0
   427
    timeF@long_name = "year" 
forrest@0
   428
forrest@0
   429
    plot_data = new((/2,ntime/),float)
forrest@0
   430
 
forrest@0
   431
;----------------------------
forrest@0
   432
; for model_vs_ob
forrest@0
   433
forrest@0
   434
    plot_name = station_long(n)+"_tseries_vs_ob"
forrest@0
   435
    title = station_long(n)+"("+sprintf("%5.2f",lat_ob_long(n))+","+sprintf("%5.2f",lon_ob_long(n))+")"    
forrest@0
   436
    res@tiMainString = title
forrest@0
   437
forrest@0
   438
    wks = gsn_open_wks (plot_type,plot_name)
forrest@0
   439
    plot=new(nfield,graphic)                         ; create graphic array   
forrest@0
   440
forrest@0
   441
    i_year_mod_i = year_ob_i_long(n) - 1990 
forrest@0
   442
    i_year_mod_f = i_year_mod_i + nyear - 1 - year_setback
forrest@0
   443
forrest@0
   444
    i_year_ob_f =  nyear - year_setback - 1 
forrest@0
   445
forrest@0
   446
;   print (nyear)
forrest@0
   447
;   print (i_year_ob_f)
forrest@0
   448
;   print (i_year_mod_i)
forrest@0
   449
;   print (i_year_mod_f)
forrest@0
   450
forrest@0
   451
    do i = 0,nfield-1                           
forrest@0
   452
       plot_data(0,:) = ndtooned(data_ob (i,0:i_year_ob_f,:))
forrest@0
   453
       plot_data(1,:) = ndtooned(data_mod_long(i,i_year_mod_i:i_year_mod_f,:,n))
forrest@0
   454
       plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
forrest@0
   455
       plot(i)=gsn_csm_xy(wks,timeF,plot_data,res)            ; create plot 
forrest@0
   456
    end do
forrest@0
   457
   
forrest@0
   458
    gsn_panel(wks,plot,(/3,2/),pres)                    ; create panel plot
forrest@0
   459
forrest@0
   460
    delete (wks)  
forrest@0
   461
    delete (plot)
forrest@0
   462
forrest@0
   463
    system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
forrest@0
   464
           "rm "+plot_name+"."+plot_type)
forrest@0
   465
forrest@0
   466
    delete (data_ob)
forrest@0
   467
    delete (timeI)    
forrest@0
   468
    delete (timeF)
forrest@0
   469
    delete (plot_data)
forrest@0
   470
forrest@0
   471
 end do
forrest@0
   472
forrest@0
   473
;###################################################################
forrest@0
   474
; for the following tables,
forrest@0
   475
; sort by latitude in decending order (N->S)
forrest@0
   476
forrest@0
   477
  isort = dim_pqsort(lat_ob_long,-1)
forrest@0
   478
forrest@0
   479
  station_sort = station_long(isort)
forrest@0
   480
  year_ob_sort = year_ob_long(isort)
forrest@0
   481
  lat_ob_sort  = lat_ob_long(isort)
forrest@0
   482
  lon_ob_sort  = lon_ob_long(isort)
forrest@0
   483
 
forrest@0
   484
; print(isort)
forrest@0
   485
; print(lat_ob_sort)
forrest@0
   486
forrest@0
   487
;*******************************************************************
forrest@0
   488
; html table of site: observed
forrest@0
   489
;*******************************************************************
forrest@0
   490
  output_html = "tseries_vs_ob.html"
forrest@0
   491
forrest@0
   492
  header = (/"<HTML>" \
forrest@0
   493
            ,"<HEAD>" \
forrest@0
   494
            ,"<TITLE>CLAMP metrics</TITLE>" \
forrest@0
   495
            ,"</HEAD>" \
forrest@0
   496
            ,"<H1>Timeseries at Site: "+model_name+" vs Observation</H1>" \
forrest@0
   497
            /) 
forrest@0
   498
  footer = "</HTML>"
forrest@0
   499
forrest@0
   500
  table_header = (/ \
forrest@0
   501
        "<table border=1 cellspacing=0 cellpadding=3 width=60%>" \
forrest@0
   502
       ,"<tr>" \
forrest@0
   503
       ,"   <th bgcolor=DDDDDD >Site Name</th>" \
forrest@0
   504
       ,"   <th bgcolor=DDDDDD >Latitude</th>" \
forrest@0
   505
       ,"   <th bgcolor=DDDDDD >Longitude</th>" \
forrest@0
   506
       ,"   <th bgcolor=DDDDDD >Observed</th>" \ 
forrest@0
   507
       ,"</tr>" \
forrest@0
   508
       /)
forrest@0
   509
  table_footer = "</table>"
forrest@0
   510
  row_header = "<tr>"
forrest@0
   511
  row_footer = "</tr>"
forrest@0
   512
forrest@0
   513
  lines = new(50000,string)
forrest@0
   514
  nline = 0
forrest@0
   515
forrest@0
   516
  set_line(lines,nline,header)
forrest@0
   517
  set_line(lines,nline,table_header)
forrest@0
   518
;-----------------------------------------------
forrest@0
   519
; row of table
forrest@0
   520
  
forrest@0
   521
  do n = 0,nstation_long-1
forrest@0
   522
forrest@0
   523
     set_line(lines,nline,row_header)
forrest@0
   524
forrest@0
   525
     txt0 = station_sort(n)
forrest@0
   526
     txt1 = sprintf("%5.2f", lat_ob_sort(n))
forrest@0
   527
     txt2 = sprintf("%5.2f", lon_ob_sort(n))
forrest@0
   528
     txt3 = year_ob_sort(n)
forrest@0
   529
forrest@0
   530
     set_line(lines,nline,"<th><a href="+txt0+"_tseries_vs_ob.png>"+txt0+"</a></th>")
forrest@0
   531
     set_line(lines,nline,"<th>"+txt1+"</th>")
forrest@0
   532
     set_line(lines,nline,"<th>"+txt2+"</th>")
forrest@0
   533
     set_line(lines,nline,"<th>"+txt3+"</th>")
forrest@0
   534
forrest@0
   535
     set_line(lines,nline,row_footer)
forrest@0
   536
  end do
forrest@0
   537
;-----------------------------------------------
forrest@0
   538
  set_line(lines,nline,table_footer)
forrest@0
   539
  set_line(lines,nline,footer) 
forrest@0
   540
forrest@0
   541
; Now write to an HTML file.
forrest@0
   542
  idx = ind(.not.ismissing(lines))
forrest@0
   543
  if(.not.any(ismissing(idx))) then
forrest@0
   544
    asciiwrite(output_html,lines(idx))
forrest@0
   545
  else
forrest@0
   546
   print ("error?")
forrest@0
   547
  end if
forrest@0
   548
  delete (idx)
forrest@0
   549
forrest@0
   550
  delete (isort)
forrest@0
   551
  delete (station_sort)
forrest@0
   552
  delete (year_ob_sort)
forrest@0
   553
  delete (lat_ob_sort)
forrest@0
   554
  delete (lon_ob_sort)
forrest@0
   555
forrest@0
   556
;************************************************************
forrest@0
   557
; compute annual cycle correlation coef and M score
forrest@0
   558
;************************************************************
forrest@0
   559
forrest@1
   560
 ;score_max = 1.
forrest@1
   561
 score_max = (/6., 0., 9., 9., 6., 0./)
forrest@0
   562
forrest@0
   563
 ccr     = new ((/nstation, nfield/),float)
forrest@0
   564
 M_score = new ((/nstation, nfield/),float) 
forrest@0
   565
forrest@0
   566
 do n=0,nstation-1
forrest@0
   567
 do m=0,nfield-1   
forrest@0
   568
    ccr(n,m) = esccr(data_ob_ann(m,:,n),data_mod_ann(m,:,n),0)
forrest@0
   569
    bias = sum(abs(data_mod_ann(m,:,n)-data_ob_ann(m,:,n))/(abs(data_mod_ann(m,:,n))+abs(data_ob_ann(m,:,n))))
forrest@1
   570
    M_score(n,m) = (1. -(bias/nmonth)) * score_max(m)
forrest@0
   571
 end do
forrest@0
   572
 end do
forrest@0
   573
forrest@0
   574
 M_nee = avg(M_score(:,0))
forrest@0
   575
 M_rad = avg(M_score(:,1))
forrest@0
   576
 M_lh  = avg(M_score(:,2))
forrest@0
   577
 M_sh  = avg(M_score(:,3))
forrest@0
   578
 M_gpp = avg(M_score(:,4))
forrest@0
   579
 M_er  = avg(M_score(:,5))
forrest@0
   580
 M_all = M_nee+ M_rad +M_lh + M_sh + M_gpp + M_er
forrest@0
   581
forrest@0
   582
 M_ameriflux_nee = sprintf("%.2f", M_nee)
forrest@0
   583
 M_ameriflux_rad = sprintf("%.2f", M_rad)
forrest@0
   584
 M_ameriflux_lh  = sprintf("%.2f", M_lh )
forrest@0
   585
 M_ameriflux_sh  = sprintf("%.2f", M_sh )
forrest@0
   586
 M_ameriflux_gpp = sprintf("%.2f", M_gpp)
forrest@0
   587
 M_ameriflux_er  = sprintf("%.2f", M_er )
forrest@0
   588
 M_ameriflux_all = sprintf("%.2f", M_all)
forrest@0
   589
forrest@0
   590
;*******************************************************************
forrest@0
   591
; for station line plot
forrest@0
   592
;*******************************************************************
forrest@0
   593
forrest@0
   594
; for x-axis in xyplot
forrest@0
   595
  mon = ispan(1,12,1)
forrest@0
   596
  mon@long_name = "month"
forrest@0
   597
forrest@0
   598
;-------------------------------------------------------------------
forrest@0
   599
forrest@0
   600
  plot_data   = new((/2,nmonth/),float)
forrest@0
   601
  plot_data!0 = "case"
forrest@0
   602
  plot_data!1 = "month"
forrest@0
   603
forrest@0
   604
  do n = 0,nstation-1
forrest@0
   605
;----------------------------
forrest@0
   606
; for observed
forrest@0
   607
forrest@0
   608
    plot_name = station(n)+"_ob"    
forrest@0
   609
    title = station(n)+"("+sprintf("%5.2f",lat_ob(n))+","+sprintf("%5.2f",lon_ob(n))+")"
forrest@0
   610
    res@tiMainString = title
forrest@0
   611
forrest@0
   612
    wks = gsn_open_wks (plot_type,plot_name)
forrest@0
   613
    plot=new(nfield,graphic)                        ; create graphic array   
forrest@0
   614
forrest@0
   615
    do i = 0,nfield-1                           
forrest@0
   616
       plot_data(0,:) = (/data_ob_ann(i,:,n)/)
forrest@0
   617
       plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
forrest@0
   618
       plot(i)=gsn_csm_xy(wks,mon,plot_data(0,:),res)    ; create plot 
forrest@0
   619
    end do
forrest@0
   620
forrest@0
   621
    gsn_panel(wks,plot,(/3,2/),pres)                 ; create panel plot
forrest@0
   622
forrest@0
   623
    delete (wks)  
forrest@0
   624
    delete (plot)
forrest@0
   625
forrest@0
   626
    system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
forrest@0
   627
           "rm "+plot_name+"."+plot_type)
forrest@0
   628
forrest@0
   629
;----------------------------
forrest@0
   630
; for model_vs_ob
forrest@0
   631
forrest@0
   632
    plot_name = station(n)+"_model_vs_ob"
forrest@0
   633
    title = station(n)+"("+sprintf("%5.2f",lat_ob(n))+","+sprintf("%5.2f",lon_ob(n))+")"    
forrest@0
   634
    res@tiMainString = title
forrest@0
   635
forrest@0
   636
    wks = gsn_open_wks (plot_type,plot_name)
forrest@0
   637
    plot=new(nfield,graphic)                         ; create graphic array   
forrest@0
   638
forrest@0
   639
    do i = 0,nfield-1                           
forrest@0
   640
       plot_data(0,:) = (/data_ob_ann(i,:,n)/)
forrest@0
   641
       plot_data(1,:) = (/data_mod_ann(i,:,n)/)
forrest@0
   642
       plot_data@long_name = field(i)+" ("+field_unit(i)+")"   
forrest@0
   643
       plot(i)=gsn_csm_xy(wks,mon,plot_data,res)     ; create plot 
forrest@0
   644
    end do
forrest@0
   645
   
forrest@0
   646
    gsn_panel(wks,plot,(/3,2/),pres)                 ; create panel plot
forrest@0
   647
forrest@0
   648
    delete (wks)  
forrest@0
   649
    delete (plot)
forrest@0
   650
forrest@0
   651
    system("convert "+plot_name+"."+plot_type+" "+plot_name+"."+plot_type_new+";"+ \
forrest@0
   652
           "rm "+plot_name+"."+plot_type)
forrest@0
   653
 end do
forrest@0
   654
forrest@0
   655
;###################################################################
forrest@0
   656
; for the following tables,
forrest@0
   657
; sort by latitude in decending order (N->S)
forrest@0
   658
; sort by lat in decending order (N->S)
forrest@0
   659
forrest@0
   660
  isort = dim_pqsort(lat_ob,-1)
forrest@0
   661
forrest@0
   662
  station_sort = station(isort)
forrest@0
   663
  year_ob_sort = year_ob(isort)
forrest@0
   664
  lat_ob_sort  = lat_ob(isort)
forrest@0
   665
  lon_ob_sort  = lon_ob(isort)
forrest@0
   666
  M_score_sort = M_score(isort,:)
forrest@0
   667
 
forrest@0
   668
; print(isort)
forrest@0
   669
; print(lat_ob_sort)
forrest@0
   670
;###################################################################
forrest@0
   671
;*******************************************************************
forrest@0
   672
; html table of site: observed
forrest@0
   673
;*******************************************************************
forrest@0
   674
  output_html = "line_ob.html"
forrest@0
   675
forrest@0
   676
  header = (/"<HTML>" \
forrest@0
   677
            ,"<HEAD>" \
forrest@0
   678
            ,"<TITLE>CLAMP metrics</TITLE>" \
forrest@0
   679
            ,"</HEAD>" \
forrest@0
   680
            ,"<H1>Energy at Site: Observation</H1>" \
forrest@0
   681
            /) 
forrest@0
   682
  footer = "</HTML>"
forrest@0
   683
forrest@0
   684
  table_header = (/ \
forrest@0
   685
        "<table border=1 cellspacing=0 cellpadding=3 width=60%>" \
forrest@0
   686
       ,"<tr>" \
forrest@0
   687
       ,"   <th bgcolor=DDDDDD >Site Name</th>" \
forrest@0
   688
       ,"   <th bgcolor=DDDDDD >Latitude</th>" \
forrest@0
   689
       ,"   <th bgcolor=DDDDDD >Longitude</th>" \
forrest@0
   690
       ,"   <th bgcolor=DDDDDD >Observed</th>" \ 
forrest@0
   691
       ,"</tr>" \
forrest@0
   692
       /)
forrest@0
   693
  table_footer = "</table>"
forrest@0
   694
  row_header = "<tr>"
forrest@0
   695
  row_footer = "</tr>"
forrest@0
   696
forrest@0
   697
  lines = new(50000,string)
forrest@0
   698
  nline = 0
forrest@0
   699
forrest@0
   700
  set_line(lines,nline,header)
forrest@0
   701
  set_line(lines,nline,table_header)
forrest@0
   702
;-----------------------------------------------
forrest@0
   703
; row of table
forrest@0
   704
  
forrest@0
   705
  do n = 0,nstation-1
forrest@0
   706
     set_line(lines,nline,row_header)
forrest@0
   707
forrest@0
   708
     txt0 = station_sort(n)
forrest@0
   709
     txt1 = sprintf("%5.2f", lat_ob_sort(n))
forrest@0
   710
     txt2 = sprintf("%5.2f", lon_ob_sort(n))
forrest@0
   711
     txt3 = year_ob_sort(n)
forrest@0
   712
forrest@0
   713
     set_line(lines,nline,"<th><a href="+txt0+"_ob.png>"+txt0+"</a></th>")
forrest@0
   714
     set_line(lines,nline,"<th>"+txt1+"</th>")
forrest@0
   715
     set_line(lines,nline,"<th>"+txt2+"</th>")
forrest@0
   716
     set_line(lines,nline,"<th>"+txt3+"</th>")
forrest@0
   717
forrest@0
   718
     set_line(lines,nline,row_footer)
forrest@0
   719
  end do
forrest@0
   720
;-----------------------------------------------
forrest@0
   721
  set_line(lines,nline,table_footer)
forrest@0
   722
  set_line(lines,nline,footer) 
forrest@0
   723
forrest@0
   724
; Now write to an HTML file.
forrest@0
   725
  idx = ind(.not.ismissing(lines))
forrest@0
   726
  if(.not.any(ismissing(idx))) then
forrest@0
   727
    asciiwrite(output_html,lines(idx))
forrest@0
   728
  else
forrest@0
   729
   print ("error?")
forrest@0
   730
  end if
forrest@0
   731
  delete (idx)
forrest@0
   732
forrest@0
   733
;*******************************************************************
forrest@0
   734
; score and line table : model vs observed
forrest@0
   735
;*******************************************************************
forrest@0
   736
  output_html = "score+line_vs_ob.html"
forrest@0
   737
forrest@0
   738
  header = (/"<HTML>" \
forrest@0
   739
            ,"<HEAD>" \
forrest@0
   740
            ,"<TITLE>CLAMP metrics</TITLE>" \
forrest@0
   741
            ,"</HEAD>" \
forrest@0
   742
            ,"<H1>Energy at Site: Model "+model_name+"</H1>" \
forrest@0
   743
            /) 
forrest@0
   744
  footer = "</HTML>"
forrest@0
   745
forrest@0
   746
  delete (table_header)
forrest@0
   747
  table_header = (/ \
forrest@0
   748
        "<table border=1 cellspacing=0 cellpadding=3 width=100%>" \
forrest@0
   749
       ,"<tr>" \
forrest@0
   750
       ,"   <th bgcolor=DDDDDD >Site Name</th>" \
forrest@0
   751
       ,"   <th bgcolor=DDDDDD >Latitude</th>" \
forrest@0
   752
       ,"   <th bgcolor=DDDDDD >Longitude</th>" \
forrest@0
   753
       ,"   <th bgcolor=DDDDDD >Observed</th>" \
forrest@0
   754
       ,"   <th bgcolor=DDDDDD >NEE Flux</th>" \
forrest@0
   755
       ,"   <th bgcolor=DDDDDD >Shortwave <br> Incoming</th>" \
forrest@0
   756
       ,"   <th bgcolor=DDDDDD >Latent Heat</th>" \
forrest@0
   757
       ,"   <th bgcolor=DDDDDD >Sensible Heat</th>" \
forrest@0
   758
       ,"   <th bgcolor=DDDDDD >GPP Flux</th>" \
forrest@0
   759
       ,"   <th bgcolor=DDDDDD >Respiration</th>" \
forrest@0
   760
       ,"   <th bgcolor=DDDDDD >Average</th>" \
forrest@0
   761
       ,"</tr>" \
forrest@0
   762
       /)
forrest@0
   763
  table_footer = "</table>"
forrest@0
   764
  row_header = "<tr>"
forrest@0
   765
  row_footer = "</tr>"
forrest@0
   766
forrest@0
   767
  lines = new(50000,string)
forrest@0
   768
  nline = 0
forrest@0
   769
forrest@0
   770
  set_line(lines,nline,header)
forrest@0
   771
  set_line(lines,nline,table_header)
forrest@0
   772
;-----------------------------------------------
forrest@0
   773
; row of table
forrest@0
   774
  
forrest@0
   775
  do n = 0,nstation-1
forrest@0
   776
     set_line(lines,nline,row_header)
forrest@0
   777
forrest@0
   778
     txt0  = station_sort(n)
forrest@0
   779
     txt1  = sprintf("%5.2f", lat_ob_sort(n))
forrest@0
   780
     txt2  = sprintf("%5.2f", lon_ob_sort(n))
forrest@0
   781
     txt3  = year_ob_sort(n)
forrest@0
   782
     txt4  = sprintf("%5.2f", M_score_sort(n,0))
forrest@0
   783
     txt5  = sprintf("%5.2f", M_score_sort(n,1))
forrest@0
   784
     txt6  = sprintf("%5.2f", M_score_sort(n,2))
forrest@0
   785
     txt7  = sprintf("%5.2f", M_score_sort(n,3))
forrest@0
   786
     txt8  = sprintf("%5.2f", M_score_sort(n,4))
forrest@0
   787
     txt9  = sprintf("%5.2f", M_score_sort(n,5))
forrest@0
   788
     txt10 = sprintf("%5.2f", avg(M_score_sort(n,:)))
forrest@0
   789
forrest@0
   790
     set_line(lines,nline,"<th><a href="+txt0+"_model_vs_ob.png>"+txt0+"</a></th>")
forrest@0
   791
     set_line(lines,nline,"<th>"+txt1+"</th>")
forrest@0
   792
     set_line(lines,nline,"<th>"+txt2+"</th>")
forrest@0
   793
     set_line(lines,nline,"<th>"+txt3+"</th>")
forrest@0
   794
     set_line(lines,nline,"<th>"+txt4+"</th>")
forrest@0
   795
     set_line(lines,nline,"<th>"+txt5+"</th>")
forrest@0
   796
     set_line(lines,nline,"<th>"+txt6+"</th>")
forrest@0
   797
     set_line(lines,nline,"<th>"+txt7+"</th>")
forrest@0
   798
     set_line(lines,nline,"<th>"+txt8+"</th>")
forrest@0
   799
     set_line(lines,nline,"<th>"+txt9+"</th>")
forrest@0
   800
     set_line(lines,nline,"<th>"+txt10+"</th>")
forrest@0
   801
forrest@0
   802
     set_line(lines,nline,row_footer)
forrest@0
   803
  end do
forrest@0
   804
forrest@0
   805
; last row, summary
forrest@0
   806
  set_line(lines,nline,row_header)
forrest@0
   807
forrest@0
   808
  txt0  = "All_"+sprintf("%.0f", nstation)
forrest@0
   809
  txt1  = "-"
forrest@0
   810
  txt2  = "-"
forrest@0
   811
  txt3  = "-"
forrest@0
   812
  txt4  = M_ameriflux_nee
forrest@0
   813
  txt5  = M_ameriflux_rad
forrest@0
   814
  txt6  = M_ameriflux_lh
forrest@0
   815
  txt7  = M_ameriflux_sh
forrest@0
   816
  txt8  = M_ameriflux_gpp
forrest@0
   817
  txt9  = M_ameriflux_er
forrest@0
   818
  txt10 = M_ameriflux_all
forrest@0
   819
forrest@0
   820
  set_line(lines,nline,"<th>"+txt0+"</th>")
forrest@0
   821
  set_line(lines,nline,"<th>"+txt1+"</th>")
forrest@0
   822
  set_line(lines,nline,"<th>"+txt2+"</th>")
forrest@0
   823
  set_line(lines,nline,"<th>"+txt3+"</th>")
forrest@0
   824
  set_line(lines,nline,"<th>"+txt4+"</th>")
forrest@0
   825
  set_line(lines,nline,"<th>"+txt5+"</th>")
forrest@0
   826
  set_line(lines,nline,"<th>"+txt6+"</th>")
forrest@0
   827
  set_line(lines,nline,"<th>"+txt7+"</th>")
forrest@0
   828
  set_line(lines,nline,"<th>"+txt8+"</th>")
forrest@0
   829
  set_line(lines,nline,"<th>"+txt9+"</th>")
forrest@0
   830
  set_line(lines,nline,"<th>"+txt10+"</th>")
forrest@0
   831
forrest@0
   832
  set_line(lines,nline,row_footer)
forrest@0
   833
;-----------------------------------------------
forrest@0
   834
  set_line(lines,nline,table_footer)
forrest@0
   835
  set_line(lines,nline,footer) 
forrest@0
   836
forrest@0
   837
; Now write to an HTML file.
forrest@0
   838
  idx = ind(.not.ismissing(lines))
forrest@0
   839
  if(.not.any(ismissing(idx))) then
forrest@0
   840
    asciiwrite(output_html,lines(idx))
forrest@0
   841
  else
forrest@0
   842
   print ("error?")
forrest@0
   843
  end if
forrest@0
   844
  delete (idx)
forrest@0
   845
forrest@0
   846
;**************************************************************************************
forrest@0
   847
; update score
forrest@0
   848
;**************************************************************************************
forrest@0
   849
 
forrest@0
   850
  if (isvar("compare")) then
forrest@0
   851
     system("sed -e '1,/M_ameriflux_nee/s/M_ameriflux_nee/"+M_ameriflux_nee+"/' "+html_name2+" > "+html_new2+";"+ \
forrest@0
   852
            "mv -f "+html_new2+" "+html_name2+";"+ \
forrest@0
   853
            "sed -e '1,/M_ameriflux_rad/s/M_ameriflux_rad/"+M_ameriflux_rad+"/' "+html_name2+" > "+html_new2+";"+ \
forrest@0
   854
            "mv -f "+html_new2+" "+html_name2+";"+ \
forrest@0
   855
            "sed -e '1,/M_ameriflux_lh/s/M_ameriflux_lh/"+M_ameriflux_lh+"/' "+html_name2+" > "+html_new2+";"+ \
forrest@0
   856
            "mv -f "+html_new2+" "+html_name2+";"+ \
forrest@0
   857
            "sed -e '1,/M_ameriflux_sh/s/M_ameriflux_sh/"+M_ameriflux_sh+"/' "+html_name2+" > "+html_new2+";"+ \
forrest@0
   858
            "mv -f "+html_new2+" "+html_name2+";"+ \
forrest@0
   859
            "sed -e '1,/M_ameriflux_gpp/s/M_ameriflux_gpp/"+M_ameriflux_gpp+"/' "+html_name2+" > "+html_new2+";"+ \
forrest@0
   860
            "mv -f "+html_new2+" "+html_name2+";"+ \
forrest@0
   861
            "sed -e '1,/M_ameriflux_er/s/M_ameriflux_er/"+M_ameriflux_er+"/' "+html_name2+" > "+html_new2+";"+ \
forrest@0
   862
            "mv -f "+html_new2+" "+html_name2)
forrest@0
   863
  end if
forrest@0
   864
forrest@0
   865
  system("sed s#M_ameriflux_nee#"+M_ameriflux_nee+"# "+html_name+" > "+html_new+";"+ \
forrest@0
   866
         "mv -f "+html_new+" "+html_name+";"+ \
forrest@0
   867
         "sed s#M_ameriflux_rad#"+M_ameriflux_rad+"# "+html_name+" > "+html_new+";"+ \
forrest@0
   868
         "mv -f "+html_new+" "+html_name+";"+ \
forrest@0
   869
         "sed s#M_ameriflux_lh#"+M_ameriflux_lh+"# "+html_name+" > "+html_new+";"+ \
forrest@0
   870
         "mv -f "+html_new+" "+html_name+";"+ \
forrest@0
   871
         "sed s#M_ameriflux_sh#"+M_ameriflux_sh+"# "+html_name+" > "+html_new+";"+ \
forrest@0
   872
         "mv -f "+html_new+" "+html_name+";"+ \
forrest@0
   873
         "sed s#M_ameriflux_gpp#"+M_ameriflux_gpp+"# "+html_name+" > "+html_new+";"+ \
forrest@0
   874
         "mv -f "+html_new+" "+html_name+";"+ \
forrest@0
   875
         "sed s#M_ameriflux_er#"+M_ameriflux_er+"# "+html_name+" > "+html_new+";"+ \
forrest@0
   876
         "mv -f "+html_new+" "+html_name) 
forrest@0
   877
forrest@0
   878
;***************************************************************************
forrest@0
   879
; add total score and write to file
forrest@0
   880
;***************************************************************************
forrest@0
   881
  M_total = M_ameriflux_all
forrest@0
   882
forrest@0
   883
  asciiwrite("M_save.ameriflux", M_total)
forrest@0
   884
forrest@0
   885
;***************************************************************************
forrest@0
   886
; output plot and html
forrest@0
   887
;***************************************************************************
forrest@0
   888
  output_dir = model_name+"/ameriflux"
forrest@0
   889
forrest@0
   890
  system("mv *.png *.html " + output_dir) 
forrest@0
   891
;***************************************************************************
forrest@0
   892
forrest@0
   893
end
forrest@0
   894