#!/bin/csh -f

#-------------------------------------------------------------------

# note: user modifies ONLY the "user modification" section 

#

#       MODEL : model name

#       DIR_M  : directory of model data

#       DIR_O  : directory of observed data

#       DIR_S  : directory of model surface data

#       DIR_SCRIPTS  : directory of run scripts

#       FILE1 : time_mean  climatology from CLM diagnostic package

#       FILE2 : 12-monthly climatology from CLM diagnostic package

#       FILE3 : 12-monthly climatology from ATM diagnostic package

#               leave it blank, if no ATM file:

#               set FILE3 =

#       FILE7 : timeseries file generated from .... 

#       FILE8 : timeseries file generated from .... 

#       GRID  : T31, T42, or 1.9

#       BGC   : cn or casa 

#       ENERGY: new or old (model data fields)

#********************************************************************

# user modification:

# model data (no ATM file)

set MODEL  = CN

set DIR_M  = /fis/cgd/cseg/people/jeff/clamp_data/model/

set FILE1  = i01.10cn_1948-2004_ANN_climo.nc

set FILE2  = i01.10cn_1948-2004_MONS_climo.nc

set FILE3  =

set FILE4  = i01.06cn_1980-2004_ANN_climo.nc

set FILE5  = i01.10cn_1990-2004_ANN_climo.nc

set FILE6  = i01.07cn_1990-2004_ANN_climo.nc

set FILE7  = i01.10cn_Fire_C_1979-2004_monthly.nc

set FILE8  = i01.10cn_ameriflux_1990-2004_monthly.nc

set GRID   = T42

set BGC    = cn

set ENERGY = new

# in the "CLAMP metric processing" section:

#  only 00.initial.ncl and 99.final.ncl are required,

#  user can comment out any one or more of the other ncl scripts,

#  e.g. 

#  #ncl $INPUT_TEXT $DIR_SCRIPTS/10.fire.ncl

# model surface data

set DIR_S  = /fis/cgd/cseg/people/jeff/clamp_data/surface_model/

# observed data

set DIR_O  = /fis/cgd/cseg/people/jeff/clamp_data/observed/

# directory for scripts, templates and ncl files

set DIR_SCRIPTS = /fis/cgd/cseg/people/jeff/clamp/all/

#********************************************************************

# create a directory for the model by copying from a template

if ($FILE3 != "") then

   set TEMPLATE = template_1-model

else

   set TEMPLATE = template_1-model_noCO2

endif

#cp -r $DIR_SCRIPTS/$TEMPLATE $MODEL

rm -rf $MODEL

tar xvpf $DIR_SCRIPTS/$TEMPLATE.tar

mv $TEMPLATE $MODEL

# add quote, to be usesd in INPUT_TEXT

set MODELQ = \"$MODEL\"

set DIRMQ  = \"$DIR_M\"

set F1  = \"$FILE1\"

set F2  = \"$FILE2\"

set F3  = \"$FILE3\"

set F4  = \"$FILE4\"

set F5  = \"$FILE5\"

set F6  = \"$FILE6\"

set F7  = \"$FILE7\"

set F8  = \"$FILE8\"

set GRIDQ   = \"$GRID\"

set BGCQ    = \"$BGC\"

set ENERGYQ = \"$ENERGY\"

set DIRSQ   = \"$DIR_S\"

set DIROQ   = \"$DIR_O\"

set INPUT_TEXT = "model_name=$MODELQ model_grid=$GRIDQ dirm=$DIRMQ film1=$F1 film2=$F2 film3=$F3 film4=$F4 film5=$F5 film6=$F6 film7=$F7 film8=$F8 BGC=$BGCQ ENERGY=$ENERGYQ dirs=$DIRSQ diro=$DIROQ"

# CLAMP metric processing

ncl $INPUT_TEXT $DIR_SCRIPTS/00.initial.ncl

ncl $INPUT_TEXT $DIR_SCRIPTS/01.npp.ncl

ncl $INPUT_TEXT $DIR_SCRIPTS/02.lai.ncl

if ($FILE3 != "") then

ncl $INPUT_TEXT $DIR_SCRIPTS/03.co2.ncl

endif

ncl $INPUT_TEXT $DIR_SCRIPTS/04.biomass.ncl

ncl $INPUT_TEXT $DIR_SCRIPTS/06.fluxnet.ncl

ncl $INPUT_TEXT $DIR_SCRIPTS/07.beta.ncl

ncl $INPUT_TEXT $DIR_SCRIPTS/08.turnover.ncl

if ($BGC != "casa") then

ncl $INPUT_TEXT $DIR_SCRIPTS/09.carbon_sink.ncl

else

ncl $INPUT_TEXT $DIR_SCRIPTS/09x.carbon_sink.ncl

endif

if ($BGC != "casa") then

ncl $INPUT_TEXT $DIR_SCRIPTS/10.fire.ncl

endif

ncl $INPUT_TEXT $DIR_SCRIPTS/11.ameriflux.ncl

ncl $INPUT_TEXT $DIR_SCRIPTS/99.final.ncl

# create a tar file from the final output 

tar cf $MODEL.tar $MODEL